Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1168 ATGAAGACGATTCTATCGTCCGAGACCATGAATATTCCCGACGGCGTGAGCATCAAGGTTCACGCTAAGGTTATCGAGGTTGAGGGCCCTCGTGGAAAACTCGTGCGAGACTTCCACCATCTGAACTTGGACTTCCAACTTATTACCGACGATGGCGGTAAAAGGAAGCTCAAGATTGATTCTTGGTTTGGTTCTCGTAAAACCTCCGCCGCCCTCAGCCACGTTGAGAATTTGATCACCGGCGTCACCAAGGGATACCGATACAAAATGAGATTCGTGTACGCTCATTTTCCTATCAACGCTAGCATTGGCAACAACAGCAAGTCCATCGAGATCAGAAATTTCCTCGGCGAGAAGAAGGTGAGGAAAGTAGACATGCTTGAGGGCGTGTCGGTTGTTAGATCTGAAAAGGTCAAAGATGAATTGGTCTTGGATGGAAACGACATTGAACTTGTTTCTAGGTCATGTGCTCTCATTAACCAGAAATGTCATGTTAAGAACAAGGATATCCGGAAGTTTCTTGATGGTATTTATGTCAGCGAGAAGGGAACAATATTGGAAGAGTAG 567 0.4568 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFHHLNLDFQLITDDGGKRKLKIDSWFGSRKTSAALSHVENLITGVTKGYRYKMRFVYAHFPINASIGNNSKSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1168 188 Pfam Ribosomal protein L6 98 176 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 Pfam Ribosomal protein L6 12 85 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 188 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 185 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 ProSitePatterns Ribosomal protein L6 signature 2. 161 182 IPR002359 GO:0003735|GO:0005840|GO:0006412
Gso6g1168 188 SUPERFAMILY Ribosomal protein L6 86 182 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 PANTHER 60S RIBOSOMAL PROTEIN L9-1 1 188 - -
Gso6g1168 188 Gene3D - 1 85 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 Gene3D - 86 188 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso6g1168 188 SUPERFAMILY Ribosomal protein L6 1 85 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1168 Gso-Chr6 11383104 11384166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1168 1 188 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.456 3.15e-117 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1168 K02940 - gmx:100810611 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1902 4 49244924 49245988 Gso6g1168 6 11383104 11384166 GST