Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1165 ATGGGTTCGGTGGACTGTTATCCTTCTCGTACGGACGATGCTGCCGTGGTGTCTTTGGATTCGCTGCCTTTAGGGTTCCGATTCCGACCTACCGACGAGGAACTCGTCAATTACTACCTGCGACAGAAGATCAATGGTAATGGTCGCCAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCTTGGGATATGCCCGGTTTGTCGGTGGTACAGACCAAGGATCCGGAATGGTTCTTTTTCTGTCCACAGGACCGAAAGTATCCAAATGGGCATCGATTGAACAGAGCGACAAATAATGGGTATTGGAAGGCAACGGGGAAGGATCGTAGAATCAAGTCTGGGAAGGATTTAATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCACCCAAAGGGAATAGGACCAATTGGGTTATGCACGAGTATCGTCCCACTTTGAAGGAGCTTGATGGTACTAATCCTGGACAGAATCCATATGTCCTTTGTCGTTTGTTTAAGAAACATGATGAGAGCCTTGAAGTTTCACACTGTGATGAAGCAGAGCAGACTGCTTCCACTCCTGTGGCTTACTCCACAGAGGAAATACAATCTGATCTGGCTGTTGTTGCAGGATCCCCCTCACAAGTTACCGAAGATGATAAGCACCAGGCAATGATCCCTGCACACTCTGAGGAAGCAATATCCAATGTTGTAACCCCGGTTGTTTGCCGTAGTGACAGATATGATGCTTGTCATGCACCAAATCAAATTGTATTACCAACTGCGGAGGAGTTTCAACCATTGAACTATTATGACCCAAGAAACGAGCTATTGGATGATAAATTATTCTCCCCTGTAATTGCACATATTCAACCAGAATTTCATTATCAAGCAAACATCGAATCAGATGGTTGGTATGGGCTTCAATATGGTACAAATGAGACAAACATGTCAGACTTTTTGAATTCAGTTGTGAATTGGGATCAAGTATCCTTTGAGGATCTCAATTGTCAACAGCAGAGCTACCCCTTGTTTAATGTTAAGGATAGCGTATTAAGCAGCGATCTAGATTCTGAACTTGCCATTATGACATGTATGCATGCTGGTTCTGCGGAGGGGCCAAATAACGGAAGGAAACCTTTGGTGATAACTTCAGAATTTCGCAGCACCACTGGCATCCCTGTTGACTGTGGTGGTGACGAGCAAAAAAGCAATGTTGGGTTATTTCAAAACAATTCCCAGAGAGCTTTTACTGATGTTAATATAGGCCAAGTATATAATGTAGTCGATGATTATGAGCAACGAGGAATCTACAGTGCAGTTGCTAGTGGCAATACTGGAATCATTAGGAGGCATCGTGAGGTACAAAATGAACAGCTAAGCTCAAATTCAACCCAAGGTACTGCACAGAGAAGAATTCGTTTGTCAATGGCTACACATGGCTCAAATAAGATGGTGAAAAGTGGAAGTTGTGCACAAGAAGAGCTTAATTTAAAATCCGTCATTGCTATGGAGGAGAAAGCTTCAGAAAGCCATATTTCTGATGAAAGTTCTACTCTTACTAATGACGGGAATGAACTGCCGAAGACATCCAAATCATCCGGCAAAAGAAAGATTTCTCGACAAGCTACAAAAGCAGGCTCAACCTTGGGGTTGAAAGACTTTTTATTGCTCAGAAGGGTGCCTTACATTTCGAAGGCTTCCTCAAATCGTGCCAAGTGCTCTTCTGTTTTTGTAGTTTCTGCCTTTGTAATGGTCACCTTAGTGGTCTTTACTGACATCTGGGGATATCTTAAATTTTAA 1797 0.4324 MGSVDCYPSRTDDAAVVSLDSLPLGFRFRPTDEELVNYYLRQKINGNGRQVWVIREIDVCKWEPWDMPGLSVVQTKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRRIKSGKDLIGMKKTLVFYTGRAPKGNRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEVSHCDEAEQTASTPVAYSTEEIQSDLAVVAGSPSQVTEDDKHQAMIPAHSEEAISNVVTPVVCRSDRYDACHAPNQIVLPTAEEFQPLNYYDPRNELLDDKLFSPVIAHIQPEFHYQANIESDGWYGLQYGTNETNMSDFLNSVVNWDQVSFEDLNCQQQSYPLFNVKDSVLSSDLDSELAIMTCMHAGSAEGPNNGRKPLVITSEFRSTTGIPVDCGGDEQKSNVGLFQNNSQRAFTDVNIGQVYNVVDDYEQRGIYSAVASGNTGIIRRHREVQNEQLSSNSTQGTAQRRIRLSMATHGSNKMVKSGSCAQEELNLKSVIAMEEKASESHISDESSTLTNDGNELPKTSKSSGKRKISRQATKAGSTLGLKDFLLLRRVPYISKASSNRAKCSSVFVVSAFVMVTLVVFTDIWGYLKF* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1165 598 MobiDBLite consensus disorder prediction 507 543 - -
Gso6g1165 598 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Gso6g1165 598 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Gso6g1165 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 460 - -
Gso6g1165 598 MobiDBLite consensus disorder prediction 512 527 - -
Gso6g1165 598 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Gso6g1165 598 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 17 460 - -
Gso6g1165 598 SUPERFAMILY NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1165 Gso-Chr6 11352936 11356268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1165 15 212 NAC Transcription Factor Family AT4G35580 71.212 1.42e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g1165 NAM 3.2e-36 No_clan