Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1152 ATGCCAGAGGTGGTGATGAGTGGAGAGAAGAACTCACTGGGAGTGGAGGGGCTTGCGAAGGAAGATAGTGGTGGAAGTGGGAGCAAGGGTGGTGCTGCTCATTTGAAGGGCTTTATGAGGTGGGAGAAGTTCTTGCCCAAGATGATTTTGAGGGTGCTATTGGTTGAAGCAGATGATTCCACAAGACAGATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGCTTGAAGGCGTGGGAATTACTGAAGGGAAGACCACACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCGTATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCTATTAGAAAAAATGAATTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACAGGCATTAATGGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACGAAGCCTGACTGTGAAGCTGAGAGTGGCCCTGTCGATAACATCGATAACATCCAGGAATTTTCTCCGCTGAAATGTGGGGAAGCGTATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCATTCGCTTAGGCCAGACATTAATGATGCATGCCAGTCATGCTGGAGGATTAAATGTGAGCATCTGCAAAAATGGTGAGGCAAGCACAACTGATGCTGATCCAGAGCATTTTGGGAATGGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATGAACTCTTCCAAGGAAGCCATTGACTTCATTGGAGCATTTCATACTCATCCAATCTGCACCCTGAAAAATTCCACAGTTAATTGCACGGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGACAACAGATAGCAAATTGTGAAAAAAACATCTCACGCATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAACCTGAACTTGCAACCTCACACTCCCAGCCAGGGCATTCTCTCCCAATTCCTGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACCTATGGTTCTGTATTTCCTTCAGTGTTTCGTGCCCAGTCAGGTTCACCAGCAATGCCAAGTCCAAATTCAGTTATGCTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAACCTGGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACATGAGCACAAATCAGAAAATGCAGAAGATCAAGGACATATCTCTCCTACCACTGATCAAAGTGTTTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGCAAGCATAAAGACCTCACAAGCAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATTGCAAAGAATATGATCATTCACATATTTCTGACACACTGGAGAGGAGAGCATGA 2103 0.4341 MPEVVMSGEKNSLGVEGLAKEDSGGSGSKGGAAHLKGFMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSVSGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDCEAESGPVDNIDNIQEFSPLKCGEAYPSGTETQQVETSIRLGQTLMMHASHAGGLNVSICKNGEASTTDADPEHFGNGISGEAHDNHYVQMNSSKEAIDFIGAFHTHPICTLKNSTVNCTGKFDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQISTPAVLINFSDQQRQQIANCEKNISRIATGCNSDSSTPSMQRCIVSPTTVQSKEPELATSHSQPGHSLPIPVKGVRFNDLCTTYGSVFPSVFRAQSGSPAMPSPNSVMLLEPNFQVNAFYQSNMKESSSEQLYEPGGPNGNTTQNHIVYTHEHKSENAEDQGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHKDLTSNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDCKEYDHSHISDTLERRA* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1152 700 CDD psREC_PRR 52 155 - -
Gso6g1152 700 Pfam CCT motif 630 672 IPR010402 GO:0005515
Gso6g1152 700 Pfam Response regulator receiver domain 52 163 IPR001789 GO:0000160
Gso6g1152 700 ProSiteProfiles CCT domain profile. 630 672 IPR010402 GO:0005515
Gso6g1152 700 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 666 IPR045279 GO:0009736
Gso6g1152 700 SUPERFAMILY CheY-like 50 176 IPR011006 -
Gso6g1152 700 Gene3D - 48 234 - -
Gso6g1152 700 SMART REC_2 50 165 IPR001789 GO:0000160
Gso6g1152 700 ProSiteProfiles Response regulatory domain profile. 51 169 IPR001789 GO:0000160
Gso6g1152 700 MobiDBLite consensus disorder prediction 222 242 - -
Gso6g1152 700 MobiDBLite consensus disorder prediction 556 576 - -
Gso6g1152 700 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 36 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1152 Gso-Chr6 11261812 11266575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1152 295 674 Response Regulator Gene Family AT5G24470 28.040 1.09e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso6g1152 Response_reg 3.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1152 K12130 - gmx:100777119 1384.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1915 4 49361479 49366486 Gso6g1152 6 11261812 11266575 GST