Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1145 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGTATACAAAACATACTATGTTGAATATATTGTTTGTAATACTTTTAATATTGCACCTGAATTGTTCATTGAATTATGCAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGA 900 0.4478 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGSGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSVSPIKSSRYTKHTMLNILFVILLILHLNCSLNYAGQDHVHDLDLLVRCCQVVVEFLKKPVVLW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1145 299 CDD RRM2_SF2_plant_like 121 196 - -
Gso6g1145 299 CDD RRM1_SF2_plant_like 8 79 - -
Gso6g1145 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 185 IPR000504 GO:0003723
Gso6g1145 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gso6g1145 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gso6g1145 299 Gene3D - 2 120 IPR012677 -
Gso6g1145 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Gso6g1145 299 MobiDBLite consensus disorder prediction 81 111 - -
Gso6g1145 299 Gene3D - 121 198 IPR012677 -
Gso6g1145 299 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 246 - -
Gso6g1145 299 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gso6g1145 299 SMART rrm1_1 122 191 IPR000504 GO:0003723
Gso6g1145 299 MobiDBLite consensus disorder prediction 201 240 - -
Gso6g1145 299 MobiDBLite consensus disorder prediction 217 231 - -
Gso6g1145 299 SUPERFAMILY RNA-binding domain, RBD 6 191 IPR035979 GO:0003676
Gso6g1145 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1145 Gso-Chr6 11212706 11217737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1145 8 179 Eukaryotic Initiation Factors Gene Family AT4G34110 26.966 3.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1145 K12890 - gmx:100800653 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1922 4 49419701 49424862 Gso6g1145 6 11212706 11217737 GST