Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1143 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTAGAAAACAGTGTAGTATCATCGGACTCGGGCGAGGTTGAGAAATCAAAACCCAGAAGTGGGTCCATCAACGACGATCAGAAGCTGAACATCGGTGTCTTCAACCACCAAGATAGAGTTCCTGGCACTATGCCAGTGCCCAATAGCAATTATAACTACAATGCCCAAATGGGTCAGATGCACGCAAATGGGGTGAACAATGATGGGTATGGGATGAATGGGGTCATGAGTGGGGAGAATGAGGGTGAGAGTTTCAAGCGTGATATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAAGCAATACTCATGGCTACCTAGCTGGACCCGGTGCCGGCGCCGGGTTTGGTTACCCTAATAATTTTATACTGCTCAATAACTTTGGTAACGCTAACGGCCAAACTAACAGAAGGAGGAAGAATGGCTATAATCAAGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAAATGACTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCGGCACTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTCTGGGTTCACTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGATCACGTGCTCCTCGCCCTACTATGCACTGA 1137 0.4538 MAVAENVGAKIGSSSQNLENSVVSSDSGEVEKSKPRSGSINDDQKLNIGVFNHQDRVPGTMPVPNSNYNYNAQMGQMHANGVNNDGYGMNGVMSGENEGESFKRDMRDLEELLSKLNPMAEEFVPPSLSNTHGYLAGPGAGAGFGYPNNFILLNNFGNANGQTNRRRKNGYNQGKRRVNHKMDMEKREEMTRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPTMH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1143 378 Gene3D - 277 372 IPR012677 -
Gso6g1143 378 Gene3D - 155 270 IPR012677 -
Gso6g1143 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 378 - -
Gso6g1143 378 MobiDBLite consensus disorder prediction 9 28 - -
Gso6g1143 378 CDD RRM1_CID8_like 192 270 IPR034823 -
Gso6g1143 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Gso6g1143 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Gso6g1143 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Gso6g1143 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 378 - -
Gso6g1143 378 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Gso6g1143 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Gso6g1143 378 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Gso6g1143 378 SUPERFAMILY RNA-binding domain, RBD 164 269 IPR035979 GO:0003676
Gso6g1143 378 MobiDBLite consensus disorder prediction 1 44 - -
Gso6g1143 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Gso6g1143 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Gso6g1143 378 CDD RRM2_CID8_like 286 367 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1143 Gso-Chr6 11185066 11189930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1143 192 361 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 9.16e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1143 - - gmx:106794116 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1924 4 49452630 49458318 Gso6g1143 6 11185066 11189930 GST