Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1142 ATGATGAGTCCAAACCTTGCAAAACAAGTTGGGGACACAACCTATACCAAGATCTTTGTTGGAGGATTAGCTTGGGAGACTAAGAGAGATACTTTAAAACGCTATTTCGATCAGTTTGGGGAGATCTTAGAGGCCGTCGTCATCACTGACAGAATCACAGGAAGATCAAAAGGATATGGCTTTGTGATCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCATAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAACTGTAATCTTGCAGCTCTTGGTGCACAGAAATTTGATCCATCTATAACAACAGGAAGGCAAAAATTCAGTAGCCCTTCATGGAATATGGCACCAATTCCATTGCAAGGAACTTCCACTCATTACAATCAGCACATACCACACTACCCATTTCCGCATCCAGTCTACAGGTATCCTGGTTATCCTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCTTATGGTGGACAGCAGCTTCCACTCTGTTGGTTTCCAGCATATTGCCAACCCTTTTATGGCCTTAGTAGACAGTTTATTCCAACAGCATATGTGAAAAAGGCACAAACCCCTGACGTGTCACCTCAGGAGTTCACGGTTGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCCTCAATTTGCAGCACTGGATTAGACACAGGAACAGTACCAGCTACAGGAGTGCTAGAATCCCACCAAGAACAGAAGTCTTCAACTTAA 741 0.4332 MMSPNLAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRITGRSKGYGFVIFRDPNSAIRACHNPYPVIDGRRANCNLAALGAQKFDPSITTGRQKFSSPSWNMAPIPLQGTSTHYNQHIPHYPFPHPVYRYPGYPHPQDLYEMNYNNAYGGQQLPLCWFPAYCQPFYGLSRQFIPTAYVKKAQTPDVSPQEFTVVGFSEPISASPSICSTGLDTGTVPATGVLESHQEQKSST* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1142 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Gso6g1142 246 Gene3D - 2 106 IPR012677 -
Gso6g1142 246 SUPERFAMILY RNA-binding domain, RBD 6 91 IPR035979 GO:0003676
Gso6g1142 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Gso6g1142 246 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
Gso6g1142 246 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
Gso6g1142 246 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gso6g1142 246 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1142 Gso-Chr6 11176398 11178849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1142 1 147 C2H2 Transcription Factor Family AT2G19380 30.539 1.66e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1142 - - gmx:100799072 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1925 4 49463078 49465434 Gso6g1142 6 11176398 11178849 GST