Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1140 ATGATCTACTTTCGACATATTTTGCTCCTATTTTTCCTACTTGATAATTTTCATGACATACTATGCAACCATGACACAGACAGAGATGCCCTTCTTTCTTTCAAATCCCAAGTGAGTGACCCCAAAAATGCTCTGTCTAGGTGGTCTTCAAATTCCAATCACTGCACCTGGTATGGTGTCACATGCTCCAAAGTTGGCAAGAGGGTCAAATCTCTAACTCTACCAGGACTTGGCCTCTCCGGCAAACTACCCCCTCTGCTTTCCAACCTCACTTACCTCCACTCACTTGACCTTTCCAACAACTATTTTCATGGCCAAATACCCCTAGAATTTGGCCATCTCTCCCTTCTCAATGTGATTAAATTACCTTCCAACAATCTCCGTGGTACACTTTCACCAAAGCTGGGTCATCTCCACCGTCTACAAATTTTAGACTTTTCAGTCAATAATCTCACAGGTAAAATTCCTCCATCATTTGGCAATCTCTCTTCTCTTAAGAATCTTTCCTTGGCAAGGAACGGTTTGGGTGGTGAGATTCCAACTCAACTTGGTAAGCTCCAAAACCTTTTATCTCTTCAACTCTCTGAGAACAATTTCTTTGGCGAGTTTCCAACTTCTATCTTCAACATCTCTTCCTTAGTCTTCTTATCCGTGACAAGCAACAATTTATCAGGCAAGTTACCACTAAATTTTGGCCATACCCTTCCAAATTTAAAGGATCTAATTCTGGCAAGCAATAGGTTTGAAGGGGTAATTCCGGATTCCATATCCAATGCCTCACATCTTCAATGCATTGACCTTGCTCACAATAACTTTCACGGCCCCATACCTATATTCAACAACTTGAAAAACCTTACCCACCTGATTCTTGGTAATAATTTTTTCTCTTCCACGACCTCGTTGAATTTTCAGTTCTTCGATTCCCTTGCAAACTCCACCCAGTTGCAAATTCTCATGATCAATGATAACCATTTGGCTGGGGAGCTTCCAAGCTCTTTTGCTAATCTGTCTGGCAATCTTCAACAATTATGCGTTGCTAATAATTTGCTAACTGGTACCCTTCCTGAAGGAATGGAGAAATTTCAAAATCTCATATCCTTGTCTTTTGAAAACAATGCTTTCTTTGGAGAGCTACCATCAGAAATAGGAGCACTACATATTCTACAGCAAATTGCGATATACAACAACAGCTTGTCTGGAGAAATTCCAGACATTTTTGGCAATTTCACAAATCTGTATATCCTTGCAATGGGATATAACCAGTTCTCGGGTAGAATTCACCCAAGTATTGGACAATGCAAGAGATTAATTGAGCTTGACTTGGGAATGAACAGGCTTGGCGGGACCATACCAAGGGAGATTTTTAAGCTTTCTGGTTTAACAACCTTGTATTTAGAAGGGAACTCTCTGCATGGTTCGCTTCCTCATGAGGTCAAAATCCTGACACAACTTGAGACCATGGTTATATCTGGCAACCAATTGTCAGGGAACATTCCTAAGGAAATAGAGAATTGTTCTAGCTTAAAGCGGCTTGTGATGGCAAGCAACAAATTCAATGGTTCAATCCCAACTAATCTTGGGAATTTAGAATCCCTTGAAACTTTGGATTTGTCATCAAACAATCTCACCGGCCCTATTCCTCAAAGTTTAGAAAAACTTGACTACATACAGACATTAAATTTGTCATTCAACCATTTGGAAGGGGAGGTTCCAATGAAAGGTGTTTTTATGAACCTTACAAAGTTTGATCTTCAAGGTAACAACCAACTGTGTAGCCTTAACATGGAAATTGTGCAGAATTTGGGAGTTCTCATGTGTGTTGTTGGCAAAAAGAAAAGAAAGATCTTACTCCCTATCATACTCGCAGTTGTTGGTACTACTGCTTTGTTCATTTCAATGCTCTTAGTGTTTTGGACAATCAACAATAAAAGAAAGGAGAGGAAAACCACTGTGTCGTTGACCCCTCTCAGAGGGTTGCCTCAAAACATATCTTATGCTGATATTCTGATGGCCACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTTTGGTTCTGTGTACAAGGGAGTGTTCAGCTTCAGCACTGGTGAAACCGCCACCCTTGCTGTCAAAATCCTAGACCTGCAACAAAGCAAAGCTTCTCAGAGTTTCAATGCTGAATGTGAAGCTTGGAAAAATGTTAGGCATCGGAACCTAGTGAAGGTTATTACTTCTTGCTCCAGCCTTGATTATAAGGGAGAGGAATTCAAGGCCCTTGTTATGCAGTTCATGCTCAATGGTAACTTGGACGTGAATCTATACCCGGAAGATGTTGAGTCAGGATCCTCTCTAACCTTGTTGCAAAGATTGAACATTGCCATTGATGTTGCTTCTGCTATGGACTACTTGCACCATGACTGTGATCCACCAGTAGTCCATTGTGATCTGAAACCTGCCAATGTCCTTCTAGATGAATATATGGTTGCACATGTTGCAGATTTTGGATTGGCAAGGTTTCTCTATCAAAATACATCAGAAATGCAGAGTAGCACTCTAGGACTGAAGGGATCAATCGGCTATATTGCCCCAGAATATGGTCTAGGAGGCAAGGCTTCAACTCAGGGAGATGTATACAGTTTTGGGATCCTACTGCTAGAGATGTTCATAGCCAAAAGACCAACTGATGAAATATTCAAAGAAGGATTAAGCCTGAGCAAATTTGTCTCAGCCATGGATGAGAATCAAGTACTGAAGGTTGCTGATCGAAGGCTTATTGATGATTATGCATATTCAACACAAAGGTCGAGCACTGGTGATCATAGCAGTAGCTTTTGCGGCAACACAAATTGGACGCACAAAGCTGAGGAGTGCATAGCTGGTGTGATAAGAGTTGGGTTGTGTTGCACAGTTCATCAACCCAAAGATCGATGGAGCATGAGAGAGGCCTCAACAAAATTGCATGCAATTAAGCACTCTATGTTGTCCTTGTGA 2979 0.4109 MIYFRHILLLFFLLDNFHDILCNHDTDRDALLSFKSQVSDPKNALSRWSSNSNHCTWYGVTCSKVGKRVKSLTLPGLGLSGKLPPLLSNLTYLHSLDLSNNYFHGQIPLEFGHLSLLNVIKLPSNNLRGTLSPKLGHLHRLQILDFSVNNLTGKIPPSFGNLSSLKNLSLARNGLGGEIPTQLGKLQNLLSLQLSENNFFGEFPTSIFNISSLVFLSVTSNNLSGKLPLNFGHTLPNLKDLILASNRFEGVIPDSISNASHLQCIDLAHNNFHGPIPIFNNLKNLTHLILGNNFFSSTTSLNFQFFDSLANSTQLQILMINDNHLAGELPSSFANLSGNLQQLCVANNLLTGTLPEGMEKFQNLISLSFENNAFFGELPSEIGALHILQQIAIYNNSLSGEIPDIFGNFTNLYILAMGYNQFSGRIHPSIGQCKRLIELDLGMNRLGGTIPREIFKLSGLTTLYLEGNSLHGSLPHEVKILTQLETMVISGNQLSGNIPKEIENCSSLKRLVMASNKFNGSIPTNLGNLESLETLDLSSNNLTGPIPQSLEKLDYIQTLNLSFNHLEGEVPMKGVFMNLTKFDLQGNNQLCSLNMEIVQNLGVLMCVVGKKKRKILLPIILAVVGTTALFISMLLVFWTINNKRKERKTTVSLTPLRGLPQNISYADILMATNNFAAENLIGKGGFGSVYKGVFSFSTGETATLAVKILDLQQSKASQSFNAECEAWKNVRHRNLVKVITSCSSLDYKGEEFKALVMQFMLNGNLDVNLYPEDVESGSSLTLLQRLNIAIDVASAMDYLHHDCDPPVVHCDLKPANVLLDEYMVAHVADFGLARFLYQNTSEMQSSTLGLKGSIGYIAPEYGLGGKASTQGDVYSFGILLLEMFIAKRPTDEIFKEGLSLSKFVSAMDENQVLKVADRRLIDDYAYSTQRSSTGDHSSSFCGNTNWTHKAEECIAGVIRVGLCCTVHQPKDRWSMREASTKLHAIKHSMLSL* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1140 992 SMART serkin_6 675 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1140 992 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gso6g1140 992 ProSitePatterns Protein kinases ATP-binding region signature. 681 707 IPR017441 GO:0005524
Gso6g1140 992 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Gso6g1140 992 Gene3D Ribonuclease Inhibitor 233 600 IPR032675 -
Gso6g1140 992 PANTHER RECEPTOR-LIKE PROTEIN 55 1 86 - -
Gso6g1140 992 PANTHER RECEPTOR-LIKE PROTEIN 55 160 983 - -
Gso6g1140 992 PANTHER RECEPTOR-LIKE PROTEIN 55 90 162 - -
Gso6g1140 992 Gene3D Phosphorylase Kinase; domain 1 658 759 - -
Gso6g1140 992 ProSiteProfiles Leucine-rich repeat profile. 531 554 IPR001611 GO:0005515
Gso6g1140 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Gso6g1140 992 SMART LRR_typ_2 138 161 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 235 258 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 162 186 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 282 308 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 457 479 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 529 553 IPR003591 -
Gso6g1140 992 SMART LRR_typ_2 481 505 IPR003591 -
Gso6g1140 992 Gene3D Ribonuclease Inhibitor 21 232 IPR032675 -
Gso6g1140 992 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 86 - -
Gso6g1140 992 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 160 983 - -
Gso6g1140 992 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 90 162 - -
Gso6g1140 992 Gene3D Transferase(Phosphotransferase) domain 1 760 990 - -
Gso6g1140 992 SUPERFAMILY L domain-like 338 595 - -
Gso6g1140 992 ProSiteProfiles Protein kinase domain profile. 675 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1140 992 Pfam Protein tyrosine and serine/threonine kinase 678 894 IPR001245 GO:0004672|GO:0006468
Gso6g1140 992 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Gso6g1140 992 SUPERFAMILY Protein kinase-like (PK-like) 649 982 IPR011009 -
Gso6g1140 992 SUPERFAMILY L domain-like 46 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1140 Gso-Chr6 11152411 11155660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1140 25 987 Receptor kinase-like Gene Family AT3G47570 41.517 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso6g1140 PK_Tyr_Ser-Thr 3.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1140 - - gmx:100776054 1920.59