Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1139 ATGGGTGAATTATTTGGCGTTGGAAAAAGAAGGAACATCAGCAGCAGCAACAACAACAACAACAACAACAGTTCTAGTAGTAGCGTTCTTGGGTTGGATGTGAAGGTGCAACAGAGCCCTGAAGCATTATTCCATAATAGGATGATGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATAATGGTGATGGCGATGGTCCCACGACTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGTGCTTCTTCTGTTCTTGGTCCTGCTATTGATGCTGGCTGTGGTGCTGCTCCTCCTGCACCTGTAAGAACTTTGCAGCCTTTTGACATTTCTTCTTATACTTCTTCTCCCACCTCCACTACCACAACCTTCAACTTCAAACCCCCTTCAGCAGGTGTGATGGCGGCTTCGTTGGGGTTTCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCTATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACATGATCTCCTCACACCCTCTTCTCGCTCTTCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCAAATAGCACTGACCCTGAGCCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCTAACCACAAGTACTGTGAGCGCCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAACAGCACCACCACTCCCACTAGCGTCAACAATAACAACCATCAAATCAAAAAGGCTCGCCATGAGTGTAATAATAATCCTTTTGCTACACCTGACGTTACTGCGGCTATTTCCAACCCCACATCCAGAAAAAATGGATCTTCTCCCCATTTTCTTGGGTCTACTACCACTCAGCCATACCTTGATTCTTCCCTCTCCCTTGATAACTTTGGTCTAAAAGCTGCTAGTTTTGACTCCGTGGCTTCTGTTTCTGCTAATAAGGAACCCAGGGGTTTAGAGTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTTCTGACTCACAATGGCAGTCTCTGATGCACAATAAAGATGGAATGACCAGTGTTAGTTCCTGTAACACCACCGAGTCTCAGTATCTGAATTCATTAGCACTATATAACTCTGGACTAGAACAACAGAATAGACGCCATCCTTTGTTCCTGAACCCTCTTGTTGTTCCCATGGAAAATCTCCAACCGGAGAAACCAAGGGGTTTTATTGATGCTTGGTCTAACGCTGAAAGCAATGCCAACACCAACACCACCAACAAGAACTCTGCTGCATCAATTGGTAAATTATCCCTTTCTTCTCTTGATCTATCAATGGGGGGTGCTGCTGTGAATGAAGATGTGGGTAATGTTAACATGGGTTTGGGCCTAATGGAGCCTAATGGAAAAACGCACACTGGTACTAAAATTTCTCTCTCCAATTGGCAAAACCCAGCACCTTGGGTGGCTTCATCACTTGGGGGTCCACTAGCTGAAGTTCTAAGGTCAAGCACAGTCACTGCCACCACCACCACCAATGAAGCAACCTCCAACACACCCTCGCCAGCCACCACTACACATGCTGAATCTCCATCTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCTGATAGCAGTAACAATAGCAGCCCAAGGGTTGCATCATCAAGGGCCAATTCTGAGATGGCCTTGCTAAGGTTTCAATCAAATTAA 1743 0.4561 MGELFGVGKRRNISSSNNNNNNNSSSSSVLGLDVKVQQSPEALFHNRMMMMAHHNHHHRPLSSPFDNNGDGDGPTTYMSFTNHINLVSGASSVLGPAIDAGCGAAPPAPVRTLQPFDISSYTSSPTSTTTTFNFKPPSAGVMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPHDLLTPSSRSSCMDGGFNLRLANSTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTNSTTTPTSVNNNNHQIKKARHECNNNPFATPDVTAAISNPTSRKNGSSPHFLGSTTTQPYLDSSLSLDNFGLKAASFDSVASVSANKEPRGLEWMLNGDPISLGASDSQWQSLMHNKDGMTSVSSCNTTESQYLNSLALYNSGLEQQNRRHPLFLNPLVVPMENLQPEKPRGFIDAWSNAESNANTNTTNKNSAASIGKLSLSSLDLSMGGAAVNEDVGNVNMGLGLMEPNGKTHTGTKISLSNWQNPAPWVASSLGGPLAEVLRSSTVTATTTTNEATSNTPSPATTTHAESPSGVLQKTLVSLSDSSNNSSPRVASSRANSEMALLRFQSN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1139 580 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g1139 580 MobiDBLite consensus disorder prediction 233 259 - -
Gso6g1139 580 MobiDBLite consensus disorder prediction 518 544 - -
Gso6g1139 580 MobiDBLite consensus disorder prediction 283 302 - -
Gso6g1139 580 SMART QLQ_2 148 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso6g1139 580 PANTHER - 99 569 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso6g1139 580 ProSiteProfiles WRC domain profile. 201 245 IPR014977 -
Gso6g1139 580 MobiDBLite consensus disorder prediction 10 30 - -
Gso6g1139 580 ProSiteProfiles QLQ domain profile. 149 184 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso6g1139 580 Pfam WRC 202 244 IPR014977 -
Gso6g1139 580 Pfam QLQ 149 180 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso6g1139 580 MobiDBLite consensus disorder prediction 242 259 - -
Gso6g1139 580 PANTHER GROWTH-REGULATING FACTOR 7 99 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1139 Gso-Chr6 11146557 11149992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1139 413 556 GRF Transcription Factor Family AT5G53660 36.943 4.50e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso6g1139 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1139 - - gmx:100796948 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1930 4 49528839 49532346 Gso6g1139 6 11146557 11149992 GST