Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1136 ATGGGGCATTGCTGCAGCAAAAACATCGCCGTCAACAACGAGACGCTGCCCTCCGATCACGCCCCCAAGCCGCCGCATTACGCGGCGGCGACGGTGGCGGTGGCGTCTCCGCCACCGTCGGGGAGCTCGATCTCCGCCGCGACTCCAGGGAGGAACACGCCGGCGCAATCGTTTTCGATGAGCCCGTTCCCGAGCCCCCTCCCGGCGGGCGTGGCGCCGTCGCCGGCGAAGACGCCGGGGAGGAAGTTCCGATGGCCGCTGCCGCCGCCCTCGCCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGCGGCAGGGGAAGGCGAAGCCCAAGGAGGGGCCCATACCGGAGGAGCAAGGGGAGGGTGGCGGCGGCGGCGAGGGTGAGAGGTCGCTCGATAAGAGCTTCGGTTATGGGAAGAATTTTGGGGCCAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCACACGTGTTGGGCCAAGGGGAAGAAGGGTGACCTCAAGGGACAATCTGTTGCTGTTAAAATCATATCCAAAGCTAAGATGACTTCAGCAATTGCAATCGAAGATGTACGGAGGGAGGTCAAAATGTTGAAGGCTTTATCTGGACATAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAACAACGTTTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTTGATAGAGGTGGAAGATATCCAGAGGATGATGCTAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCGTTTTGTCATCTTCAAGGAGTAGTTCATCGTGATCTAAAACCAGAGAATTTTCTTTTTGTCTCTAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAGATCAACGCCTCAATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGCTCCATAGATCTTATAGTGTTGAAGGAGACTTATGGAGTATTGGGGTTATATCATACATATTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGATCTGTCTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCCGAAGCTAAAGACTTTGTGAAGAGACTTCTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAACGAAAAAAATGCTATTCCTTTAGATATTTTGATATACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGTCTCTCGCAAAAGCATTGAATGAAGACGAGCTAATATACCTTAGAGCGCAGTTTAACCTCTTGGAGCCTAAAGATGGCTGCATCTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATACAACTGATGCCATGAAGGAGTCAAGGGTCCCTGAAATTTTAAATTTGATGGAGCCACTCTCCTATAAAAAATTGGACTTCAAAGAGTTTTGCGCTGCTGCAATCAGTGTGTACCAGCTTGAAGTTCATCAAGAATGGGATAGAATCGCTACCACAGCTTTCGAGTATTTTGAGGAAACAGGAAACCGAGTCATTTCAGTTGAGGAGTTGGCTCAGGAGATGAATTTGGGTCCATCAGCCTACTCTTCAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1800 0.4772 MGHCCSKNIAVNNETLPSDHAPKPPHYAAATVAVASPPPSGSSISAATPGRNTPAQSFSMSPFPSPLPAGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKEGPIPEEQGEGGGGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKEEDAVMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNAIPLDILIYKLVKSYVRASPLRRAALKSLAKALNEDELIYLRAQFNLLEPKDGCISLENFRVALMKNTTDAMKESRVPEILNLMEPLSYKKLDFKEFCAAAISVYQLEVHQEWDRIATTAFEYFEETGNRVISVEELAQEMNLGPSAYSSMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1136 599 SUPERFAMILY Protein kinase-like (PK-like) 144 429 IPR011009 -
Gso6g1136 599 SMART serkin_6 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1136 599 ProSitePatterns Protein kinases ATP-binding region signature. 151 177 IPR017441 GO:0005524
Gso6g1136 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Gso6g1136 599 Pfam Protein kinase domain 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1136 599 SUPERFAMILY EF-hand 440 584 IPR011992 -
Gso6g1136 599 MobiDBLite consensus disorder prediction 36 63 - -
Gso6g1136 599 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 590 - -
Gso6g1136 599 MobiDBLite consensus disorder prediction 104 133 - -
Gso6g1136 599 Gene3D Phosphorylase Kinase; domain 1 139 234 - -
Gso6g1136 599 ProSiteProfiles Protein kinase domain profile. 145 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1136 599 Gene3D - 446 514 - -
Gso6g1136 599 MobiDBLite consensus disorder prediction 32 78 - -
Gso6g1136 599 Gene3D - 424 570 - -
Gso6g1136 599 Gene3D Transferase(Phosphotransferase) domain 1 235 423 - -
Gso6g1136 599 CDD STKc_CAMK 144 406 - -
Gso6g1136 599 PANTHER CDPK-RELATED KINASE 3-LIKE ISOFORM X1 52 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1136 Gso-Chr6 11102171 11109540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1136 1 590 EF-hand Containing Proteins AT3G50530 57.367 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso6g1136 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1136 - - gmx:100794478 1105.51