Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1119 ATGGCGAACGAATTAGTAGCTCGTGCCTCACATGCCCCAACATCTGAGTTACTTTCCCGGACCATCTTTGCTGTATTTGACACTATCAAAGCAGCCAATGAGGTTGTGATTCACAAGGAAAATTTAAAGAGATTCTCTGTTCACTTGAAGAATGTCTCACTCATATTGAAGTCTTTATCGAAGCAAGACATACACAATTCCGCGAGCTTGGAAAATGCTATGAATGGTCTCTACCGAGAGATAAGTGAGTTATGCAAGAAAATGTTGGATGCTGAGTATCAAACAGCTGCAGCAGATGAGGAAATTTTGAAGAAAATTGAGACAGCGATACAAGAGGGAAATGTTGATCGGTCGTATGCGAATCAGTTGCTAACCTGCATTGCAGATGCTATAGGGGTCCCCTTGGAGCATGGTGCATTGAAGAGAGAATTTGAAGAGCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGGTAGATGTGGCAGAAGCTCTACATATGAAGCAGATTATTGCAGTGCTTGGAAAGGCTGATTTTATAACTTCAGCACAAGAGAAGGAAACTAGGTATTTTGAGAAGAGAAACTCCTTGGGAGAGAGACCATTGATGCCTCTTCAGTCTTTTTACTGCCCAATCTCTCTCGCTATTATGGCAGACCCTGTGGAGACTTCTTCCGGGAAGACATTTGAGAGAAGGGAAATAGAGAAATGGTTTGCTGAAGGAAACACTCTCTGTCCCTTGACCAGGTTGCCTCTAGATACTAAAATCCTAAGGCCAAATAAAACTCTTAAGCAGTCTATTCAAGAGTGGAAGGACAGGAACACAATGATTACCATTTCTGCCATCAAATCCGAACTTGAAACAAATGATGAAGAGGGAGTGGTTCAATCCTTAGAAAAGCTACAGAAGCTTTGCTTAGAAAGAGAGGTTCACCGAGAATGGTTAAAAATGGAGAATTACATTACTGTTCTTATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCATGTTCTACTCATCCTGTGTATGCTTGCAATGGATAATGCAGACAACAAGGAAGATATTGCTAAAGTGGATAATGCACTTGGATTGATTGTTCGCTCACTTTCACGTCAAGCTGAGGAACGCAAGCTGGCATTGGTGTTGCTGTTGGAGTTATCTAAATGTAAAATGGTGTGCAGTCTCATAGGAAGCATTCAAGGAAGCATACTTCTCCTGGTATCAATGATAAATAGTGATGATGTTGAAGCAGCCAAACATGCACATGAGCTGCTGGTGAAACTCTCTGTTCTTGATCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGATCAGAAAATATGAAAATAGTTATGACTGAAACTTTGTCCAAAATTACATTAACCGACCAGAACAAATTGTCCTTGGTCAAAGATGGGGCATTGCAACCTCTTGTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAAGTGGCTGTCAAAGCTCTACTACAGTTCTCAAGCTTGCCAGAGAATGGCCTCCAGATGATCAAGGAAGGTGTTGCTCCACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTTCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCTATGTCAACAACTTACCAACATGCTGAACCAGAACAGGTTTCATTGCTAGATTCTGAGGAAGACATATATAAATTCTTCTCTTTAATTTCTTTGACGGAACCTGAGATACAAAATAAGATTCTCAGAGCTTTCCAGGCATTGTGCCAATCTTTCTATGGCCTCCGCATCAGAAAGAGGTTGAGACAGATATCAGCAGCTAAAGTTTTGGTCCACTTGTTGGAGCTTAATACCCAACCAGTGCAGGTCAATTCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGGTGATGATGGCAACATCTCATCACATATAACTGAAAGATTCATCAAAGTCTTGCTTACCATCATTGAGGCCTCTGATGACGCTGAAGCGATGGTTACTGCTATGGGTATCATCTCTAAACTACCACAGGAGTCTCACATGACTCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACCGACCAACATAAGCATGTCTCACACAAAAAACAAGTCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAATTTGGAGTGGCAGAAGAGAGTGGCATTAGAAGGCATAATCCCAGTGCTGGTGCAGTTGCTGCATTCCGGAACACCCTTTACAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCGCTTGAGCGAGCCAATAAAGAAGCCTAGCATTTTCAAATGCTGCCTTGTAGCCAAAGAAACTGGTTGTCCAGCACACTTAGGCACCTGCTCAGTTGAGTCTTCATTCTGCATTTTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCATGCTTGCAGATCAAGATGATGGAACGCGCGAAGCTTCCTTAAATGCACTGCTAACTTTGGTTGATAGTGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCTATTGCACCAATGATACAACTATCGAGTGTTCCAATTCCGAGGTTGCAGGAAAGAATTCTAATAGCTTTAGAAAGAATTTTTCAACTAGATGATGTGAGAAATAAGTACAAAGTTGTGGCCACGATGCACTTGGTAGAAATAACTCAGGGGAAAGATAGTCGAATGAGAAGTCTTGCTGCCAAGTGCCTTGCTCAATTGGGTGAACTTAATAAACAGTCCTCTTATTTTTAG 2850 0.4116 MANELVARASHAPTSELLSRTIFAVFDTIKAANEVVIHKENLKRFSVHLKNVSLILKSLSKQDIHNSASLENAMNGLYREISELCKKMLDAEYQTAAADEEILKKIETAIQEGNVDRSYANQLLTCIADAIGVPLEHGALKREFEELKNEMENAKSRVDVAEALHMKQIIAVLGKADFITSAQEKETRYFEKRNSLGERPLMPLQSFYCPISLAIMADPVETSSGKTFERREIEKWFAEGNTLCPLTRLPLDTKILRPNKTLKQSIQEWKDRNTMITISAIKSELETNDEEGVVQSLEKLQKLCLEREVHREWLKMENYITVLIGLLSSKNREIRKHVLLILCMLAMDNADNKEDIAKVDNALGLIVRSLSRQAEERKLALVLLLELSKCKMVCSLIGSIQGSILLLVSMINSDDVEAAKHAHELLVKLSVLDQNVIEMAKANYLKPLLLKLSTGSENMKIVMTETLSKITLTDQNKLSLVKDGALQPLVQLLLNDDLEIKKVAVKALLQFSSLPENGLQMIKEGVAPPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTYQHAEPEQVSLLDSEEDIYKFFSLISLTEPEIQNKILRAFQALCQSFYGLRIRKRLRQISAAKVLVHLLELNTQPVQVNSLKLFYCLTEDGDDGNISSHITERFIKVLLTIIEASDDAEAMVTAMGIISKLPQESHMTQWLLDSGALKTILTCLTDQHKHVSHKKQVIENSVQALCRFTVSTNLEWQKRVALEGIIPVLVQLLHSGTPFTKQNAAISIKQFSESSYRLSEPIKKPSIFKCCLVAKETGCPAHLGTCSVESSFCILQANALEPLVRMLADQDDGTREASLNALLTLVDSEAPQSGSKVLANSNAIAPMIQLSSVPIPRLQERILIALERIFQLDDVRNKYKVVATMHLVEITQGKDSRMRSLAAKCLAQLGELNKQSSYF* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1119 949 SUPERFAMILY RING/U-box 195 275 - -
Gso6g1119 949 Coils Coil 137 164 - -
Gso6g1119 949 SMART Ubox_2 206 269 IPR003613 GO:0004842|GO:0016567
Gso6g1119 949 Pfam U-box domain 207 273 IPR003613 GO:0004842|GO:0016567
Gso6g1119 949 Gene3D - 609 804 IPR011989 -
Gso6g1119 949 Gene3D - 402 603 IPR011989 -
Gso6g1119 949 SMART arm_5 432 472 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 514 557 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 817 857 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 694 740 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 743 783 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 861 901 IPR000225 GO:0005515
Gso6g1119 949 SMART arm_5 473 513 IPR000225 GO:0005515
Gso6g1119 949 SUPERFAMILY ARM repeat 446 797 IPR016024 -
Gso6g1119 949 SUPERFAMILY ARM repeat 727 943 IPR016024 -
Gso6g1119 949 CDD RING-Ubox_PUB 207 248 IPR045210 -
Gso6g1119 949 ProSiteProfiles U-box domain profile. 202 276 IPR003613 GO:0004842|GO:0016567
Gso6g1119 949 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 484 526 IPR000225 GO:0005515
Gso6g1119 949 Gene3D - 807 947 IPR011989 -
Gso6g1119 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 280 IPR013083 -
Gso6g1119 949 Gene3D - 281 401 IPR011989 -
Gso6g1119 949 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 79 949 - -
Gso6g1119 949 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 82 - -
Gso6g1119 949 Pfam Armadillo/beta-catenin-like repeat 474 508 IPR000225 GO:0005515
Gso6g1119 949 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 79 949 - -
Gso6g1119 949 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 82 - -
Gso6g1119 949 SUPERFAMILY ARM repeat 278 431 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1119 Gso-Chr6 10946270 10951453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1119 205 949 U-box Gene Family AT1G76390 27.764 4.41e-59 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1119 - - gmx:100818273 1712.2