Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1102 ATGGGCTTTGTCTTTGTCTCTGACCGCGATTTTCCCAATCTTGACAACGTTCCTCATACCTTCACCTCATCTTTTTCCTTTGCTCAACTAAACCACACTCACAAAATAATGGAGGTTTCACCATTGGAGGGTTTCTCCGAACTTGATTGGTGGACACCGCAGTTGCCATATTCAAGCAACCACCTTTGCTTCAATGAGTTCCCGGATTTGGAAAATCTGGACCTCGATTTCAGCCTCCCATCCCTTGGTGAACATTTGGAGGAGGTGGACCAAAAGCCCTCGAACATTGTTGTTCCCGAAGGGCTTCGTTGCAATCATGAAAAGGTTTTTGGGGATGCTTTATTGGCCACTGAACATGTTTCTGCCACTTGTGTGAAGAAAGAGCAGGTGCTGAATAATATTGATCAGAGTCCATTGCCAGTGCTTCTAGCTAGTAACAGCACTACGAGGAAGAAGCCTTGTGCTTTGGAATTTGAGGAAGCTTCATTCGCGATTCAAAATCAAAATGGGTCAGCCACTGCGAGTTATTTGAAGAAAGAGGAGGTGCAGAACATTATTCATCAGAGGCCATTGCCAGTGTCCAGTAGCAGCAAGAAGAGGACGTGTGTGTTAGAGTTTGATGAGATAAAGAAGCATTTTGGGGTTCCCATAACTGAAGCAGCGAAGAGATTGAATGTGGGACTAACCATGTTGAAAAGAAGGTGCAGGGAGCTCAGCATCACGAGGTGGCCACATAGGAAACTCAAGAGCTTGCAATTACTCATCGACAATGTTAAAGAAATGGGTTTGGAAGACGAGGTTCCAAGGTTGGAGCGACAAAAAAGGTTGTTGGAAAAATTACCAGGACTGGAACTAAGTGAAGAAGCCAAGAAGCTGAGGCAAGCTTGCTTTAAAGCTAATTACAAGAAGAGAAGGTGTATGGCACTCCAAGCTTGA 936 0.4476 MGFVFVSDRDFPNLDNVPHTFTSSFSFAQLNHTHKIMEVSPLEGFSELDWWTPQLPYSSNHLCFNEFPDLENLDLDFSLPSLGEHLEEVDQKPSNIVVPEGLRCNHEKVFGDALLATEHVSATCVKKEQVLNNIDQSPLPVLLASNSTTRKKPCALEFEEASFAIQNQNGSATASYLKKEEVQNIIHQRPLPVSSSSKKRTCVLEFDEIKKHFGVPITEAAKRLNVGLTMLKRRCRELSITRWPHRKLKSLQLLIDNVKEMGLEDEVPRLERQKRLLEKLPGLELSEEAKKLRQACFKANYKKRRCMALQA* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1102 311 Coils Coil 260 280 - -
Gso6g1102 311 Pfam RWP-RK domain 204 251 IPR003035 -
Gso6g1102 311 ProSiteProfiles RWP-RK domain profile. 191 273 IPR003035 -
Gso6g1102 311 PANTHER PROTEIN RKD1-RELATED 125 310 - -
Gso6g1102 311 PANTHER PROTEIN RKD4 125 310 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1102 Gso-Chr6 10759157 10760953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1102 204 308 AtRKD Transcription Factor Family AT5G53040 61.905 1.62e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso6g1102 RWP-RK 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1102 - - gmx:102667519 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1964 4 49908767 49910349 Gso6g1102 6 10759157 10760953 GST