Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1101 ATGGACTTTGTCTTTGTCTCCGACAACGATTTCCCCAACCTTGACATCATTCCTCATACCCTCAACAACTCTTGTTTTTGCTCTCCTCATCTAAACGACACTCACAAAATAATGGAGATTTCACCATTAAAGGGTTATTTCTCCCACCTTGATTGGACACCACAGTCGCCATATCCAAGCAATGAGCTTCCGGATTTGGAAAGTTGGAACCTCGATTTCATCCTCCCACCCCTTGATGAAGATTTGGAGGAGTTGGACCAAAAGCAATTGAAAAGTGTTGTTCCCCAAGGGTTTCATTGCAATCAGGAAAAGGGTTTTGGGGATGCTTTATTGGCCACTGAAAATGTTTCTGCCACTTGTGTGAAGAAAGAGAAAGTGCAGATTATTGATCAGAGTCCTCTAGCTAGTAGCAGCAGTACGAAGAAGAGGCCATGTGCTTTGGAATTTGAGGAAATAAGCAAGTATTTTGGCGTTCCCATAAATGAAGCTGCCAAGCAAATGAATGTTGGGGTAACCATGTTGAAGAAAAGGTGCAGGGAGCTCAACATCATGAGATGGCCTCGTAGGAAAATCAAGAGCTTGCAAATGGTCATCGACAGTGTTAAGGAAATGGGTTTGGAAGACGAGGTTGCTAGGTTGGAGGAGCATAAAAAGTTGTTGGAAAAATTACCAGGACTGGAACTAAGTGAAGAAGCCAAGAAGCTGAGGCATGCTTGTTTTAAAGCTAATTACAAAAAGAAAAGGTGCATGGCACTCCAAGCTTGA 765 0.4288 MDFVFVSDNDFPNLDIIPHTLNNSCFCSPHLNDTHKIMEISPLKGYFSHLDWTPQSPYPSNELPDLESWNLDFILPPLDEDLEELDQKQLKSVVPQGFHCNQEKGFGDALLATENVSATCVKKEKVQIIDQSPLASSSSTKKRPCALEFEEISKYFGVPINEAAKQMNVGVTMLKKRCRELNIMRWPRRKIKSLQMVIDSVKEMGLEDEVARLEEHKKLLEKLPGLELSEEAKKLRHACFKANYKKKRCMALQA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1101 254 Pfam RWP-RK domain 147 194 IPR003035 -
Gso6g1101 254 PANTHER PROTEIN RKD4 136 249 - -
Gso6g1101 254 ProSiteProfiles RWP-RK domain profile. 130 215 IPR003035 -
Gso6g1101 254 PANTHER PROTEIN RKD4 136 249 IPR044607 GO:0003700
Gso6g1101 254 Coils Coil 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1101 Gso-Chr6 10751606 10753402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1101 49 251 AtRKD Transcription Factor Family AT5G53040 37.768 5.27e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso6g1101 RWP-RK 8.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1101 - - gmx:102667394 492.271