Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1089 ATGGAGTATGGAAGGTTGGGACCCTCTGATCCTGGTGGCTCCTCGCGCCTCAACAACGTTCCTCCGACATCTTCCGGGAGGAAGAAGATTGTCTTGCTTTCACTCTTTAGCGTCTTGTTAATAGCCGCGTCTGCTGTAACTGCAGTTGTCGTCCGCTCTCGTATTCAACAAAATACGAGAGCCCATGAGACTAGGCTCGGAAAGCCCACTCAAGCGATTTCACGCACGTGCAGCAAGACACGCTTTAAGACCTTGTGTGTCAAATCGCTTTTAGACTTTCCGGGATCTGAAGAGGCGTCAGAGAAGGACCTCGTCCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAAGGCTCTGTACTCCTCCGCGGCCATGTCCTACACCGCCATGGATCCCCGCGTCCGCGCCGCCTACGACGACTGCCTCGAGCTCCTCGACGACTCCGTCGACGCCCTCGCCCGCTCCCTCAACACAGTCTCCGTCGGTGCCGTCGGCTCCGCCAACGACGACGTGCTGACGTGGCTCAGCGCCGCCCTCACCAACCAGGACACCTGCGCGGAGGGTTTTACTGACGCCGTCGGCACAGTGAAGGACCATATGTCCAGCAACCTCAGGGACTTATCCGAGCTCGTGAGCAATTGTCTCGCGATATTCTCCGGCGCCGGTGCCGGCGACGACTTCGCCGGCGTCCCCATTCAGAATAGGAGGCGGTTAATGGAAATGCGAGAGGATAATTTCCCGACATGGTTGAGTCGACGAGATAGGAAATTGCTGATCTTGCCTCTGTCGCAGATACAAGCAGATATTGTGGTTTCCAAAGACGGTAACGGAACCGTTAAGACCATCGCCGAGGCCATTAAGAAGGTGCCGGAATATAGTTCACGCCGCATTATTATCTACGTCAGGGCAGGAAGGTATGAAGAAGAGAATTTAAAGTTGGGGAGGAAGAAAACAAATGTGATGTTCATAGGGGACGGGAAGGGCAAAACCGTCATCACGGGCGGAAGAAATTATTACCAGAATCTGACCACATTTCACACCGCGTCCTTCGCTGCTAGTGGTTCTGGTTTCATCGCAAAAGACATGACTTTCGAGAACTACGCCGGGCCGGGGAGGCACCAGGCGGTGGCCCTCCGCGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAACATCATCGGATACCAGGACACAATGTATGTTCACTCGAACCGTCAATTTTACCGAGAATGCGACATTTACGGAACCGTGGACTTCATATTCGGCAACGCCGCGGTGGTGTTCCAAAACTGCACCCTCTGGGCCCGAAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAACCGAAAGGACCCGAATCAGAACACGGGCATTTCGATCCACAATTGTAGGATCATGGCCACGCCGGATCTTGAAGCATCCAAGGGTAGCTACCCCACTTATCTGGGCCGTCCCTGGAAACTTTACGCTAGAACTGTTTACATGCTATCTTACATAGGGGATCACGTGCATCCACGTGGGTGGCTCGAGTGGAACACTTCCTCCTTTGCTTTAGACACGTGTTATTATGGTGAATACATGAATTATGGGCCGGGTTCAGGTCTGGGCCAACGGGTTAATTGGGCCGGGTATCGGGTTATCAATTCGACGGTGGAAGCTTCTAGATTTACGGTGGGCCAATTCATATCGGGCTCGTCATGGTTGCCCTCTACTGGAGTGGCATTCATTGCTGGCTTATCAACCTGA 1755 0.5402 MEYGRLGPSDPGGSSRLNNVPPTSSGRKKIVLLSLFSVLLIAASAVTAVVVRSRIQQNTRAHETRLGKPTQAISRTCSKTRFKTLCVKSLLDFPGSEEASEKDLVHISFNVTLQHFSKALYSSAAMSYTAMDPRVRAAYDDCLELLDDSVDALARSLNTVSVGAVGSANDDVLTWLSAALTNQDTCAEGFTDAVGTVKDHMSSNLRDLSELVSNCLAIFSGAGAGDDFAGVPIQNRRRLMEMREDNFPTWLSRRDRKLLILPLSQIQADIVVSKDGNGTVKTIAEAIKKVPEYSSRRIIIYVRAGRYEEENLKLGRKKTNVMFIGDGKGKTVITGGRNYYQNLTTFHTASFAASGSGFIAKDMTFENYAGPGRHQAVALRVGADHAVVYRCNIIGYQDTMYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCTLWARKPMAQQKNTITAQNRKDPNQNTGISIHNCRIMATPDLEASKGSYPTYLGRPWKLYARTVYMLSYIGDHVHPRGWLEWNTSSFALDTCYYGEYMNYGPGSGLGQRVNWAGYRVINSTVEASRFTVGQFISGSSWLPSTGVAFIAGLST* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1089 584 Pfam Pectinesterase 269 567 IPR000070 GO:0030599|GO:0042545
Gso6g1089 584 PANTHER PECTINESTERASE 22 582 - -
Gso6g1089 584 PANTHER PECTINESTERASE 22 582 - -
Gso6g1089 584 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Gso6g1089 584 Gene3D - 263 582 IPR012334 -
Gso6g1089 584 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g1089 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 220 IPR035513 -
Gso6g1089 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 220 IPR006501 GO:0004857
Gso6g1089 584 SMART PMEI_2 68 218 IPR006501 GO:0004857
Gso6g1089 584 SUPERFAMILY Pectin lyase-like 265 581 IPR011050 -
Gso6g1089 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 221 IPR035513 -
Gso6g1089 584 Pfam Plant invertase/pectin methylesterase inhibitor 72 218 IPR006501 GO:0004857
Gso6g1089 584 CDD PMEI-like_3 77 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1089 Gso-Chr6 10638892 10643484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1089 1 583 Carbohydrate Esterase AT3G49220 66.833 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1089 - - gmx:100776752 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1977 4 50032531 50036720 Gso6g1089 6 10638892 10643484 GST