Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1085 ATGATTATCAAACGGAATTTGAAATCCCAAATGCCGAGTCTGAAACGGGTCAAACTCGGTGACTCGGTGGGCGAGAATGATGAGTGTTCTTATGCTCGTAAGAAGAGAAAGACCAACAACGGTTACTACCCTTTGAACCTTCTCGGCGACGTGGCCGCCGGCGTGATTCCGGTGAGTTTTCACGGGCTGCTCGGTGCCGCCGGCGTGGTGGAGAAGGGGTTCTCTGCGGCATGGTGCAACGGAGTGGAATCGAACGTGAAAAACGAAGTTGTCGTGGAAGTGAAGAAGAAGAACGAGGTACAGCGGCCACCGCTGGTTAGAACTTCGAGGGGGAGAGTTCAGGTTCTCCCTTCGCGGTTCAATGATTCGGTTATTGATAATTGGAGGAAGGAGAGCAAGAGTAGTAGTGGTGGCTTGCGTGATTGTGATTATGATGAAGAATTTGAATGCAAGAAGGAGAAGTTCAGCTTCAAGGCACCCAAGGTTTGCAATAATAATCAGAAGAAAGGGAAAAGCGAGGAGAAAACGGGTTCTAAGGCTCGTAAGTACTCGGCATTGTGTAATAGTTTTGAGAGGAGCAAGTGTTTGAGTTCGCCTGGTGATGGTTCATTGGCCTTGAGGCACAGCGGGGCAGCCGCGGTTGAAGAGGATGATGAGAAGGGAAGGTTTTTGGAGGTGGAAAAGGTTGGTTTGATGGGTTTGAAGGAGAAGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGACTCAGGCACCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTAATGTTTTTAGGGTATGCGGGGAATGAGGATCAAAGGGACTATGCATGGGTGAACCATGGGATGATTTTTCCATTTATGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTACTATACTCCTTCTGACTTCCAAATGGCGATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTAGTAGCAATGGTTATGATGATTCTATTCTGAAAGCTTTTCAGAAGGTCAGTGGTTCAAACCAATATGCAGGATATCATTTTCTGAACCAGGATTTATTTGATAAGAAAGAAACACGGCCCTGTGAAGCCTGTGGGTTGAGCCTTCCTTACAAGATGTTAAAGAAAACAAAGGATTCAAGTCCCGGTGGGCAATTCCTATGTAGAACATGTGCTAGGCTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAGGTTTGGAACCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAGTGGAGCAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTGTGCAATGGTGTAGAAGGCACATATTTCCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTACTGCTCAGGTTCCTGCCAAACCTAAGAAACCTTCTCTAAAAGAAAGAAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTCATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCAGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACTGATGTTGACACATTGTGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTAAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGGGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACTAAAAGCCTTCTCCAAACTAAGAAAAAAAGTGGTTCGAGGCTAATCTCATCCAACAGAAGAAAGCAAGATGACACTCCTGTTGATAACACTGAGCATGAGCCATTTTCTGCTGCTAGATGCCGTATCTTTCAAAGAACAAACCATACCAAAAAGAGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAGTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCACTTGCAGAGAACCGAAAATGATCGGGTTTGCTTTGGTAGATCAGGCATACACGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGACATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTACCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCTCGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCCAGGATCATGAGTGTTGGTGACGACGAGAGCCGGATTGTACTCATTGCTAAGACTAACGTGGTTGCCGGTGATGAGTTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGAGGAAAACAAAGTCCCGTGCCTATGTAAAGCTCCAAACTGCCGGAAATACATGAATTAG 3204 0.4416 MIIKRNLKSQMPSLKRVKLGDSVGENDECSYARKKRKTNNGYYPLNLLGDVAAGVIPVSFHGLLGAAGVVEKGFSAAWCNGVESNVKNEVVVEVKKKNEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGGLRDCDYDEEFECKKEKFSFKAPKVCNNNQKKGKSEEKTGSKARKYSALCNSFERSKCLSSPGDGSLALRHSGAAAVEEDDEKGRFLEVEKVGLMGLKEKRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNEDQRDYAWVNHGMIFPFMDYVDRFQGQSELSYYTPSDFQMAIEEAFLAERGFTEKLIADINTAASSNGYDDSILKAFQKVSGSNQYAGYHFLNQDLFDKKETRPCEACGLSLPYKMLKKTKDSSPGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKPQPKVKWSKNNGQLVLPNRVTVLCNGVEGTYFPSLHSVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHATAQVPAKPKKPSLKERKQKLLTFLQEKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKSGSRLISSNRRKQDDTPVDNTEHEPFSAARCRIFQRTNHTKKRAADEAVSHRVRGPYHHPLDAIESLNTHRVVHEPQAFSSFRERLYHLQRTENDRVCFGRSGIHGWGLFARRNIQEGDMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVVAGDELTYDYLFDPDEPEENKVPCLCKAPNCRKYMN* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1085 1067 Gene3D - 244 350 - -
Gso6g1085 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 684 IPR013083 -
Gso6g1085 1067 CDD ePHD_ATX3_4_5_like 690 801 IPR041955 -
Gso6g1085 1067 SMART set_7 925 1048 IPR001214 GO:0005515
Gso6g1085 1067 CDD SET_SETD1-like 912 1063 - -
Gso6g1085 1067 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1067 IPR025780 -
Gso6g1085 1067 SUPERFAMILY FYVE/PHD zinc finger 633 698 IPR011011 -
Gso6g1085 1067 Pfam PHD-zinc-finger like domain 689 801 - -
Gso6g1085 1067 SUPERFAMILY SET domain 915 1067 IPR046341 -
Gso6g1085 1067 Pfam PWWP domain 250 344 IPR000313 -
Gso6g1085 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 804 IPR013083 -
Gso6g1085 1067 MobiDBLite consensus disorder prediction 830 854 - -
Gso6g1085 1067 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Gso6g1085 1067 SUPERFAMILY Tudor/PWWP/MBT 242 349 - -
Gso6g1085 1067 MobiDBLite consensus disorder prediction 837 851 - -
Gso6g1085 1067 ProSiteProfiles Zinc finger PHD-type profile. 633 684 IPR019787 -
Gso6g1085 1067 SMART PHD_3 441 493 IPR001965 -
Gso6g1085 1067 SMART PHD_3 635 682 IPR001965 -
Gso6g1085 1067 SMART PHD_3 746 802 IPR001965 -
Gso6g1085 1067 ProSiteProfiles Zinc finger PHD-type profile. 439 495 IPR019787 -
Gso6g1085 1067 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
Gso6g1085 1067 ProSiteProfiles Extended PHD (ePHD) domain profile. 687 802 IPR034732 -
Gso6g1085 1067 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1067 - -
Gso6g1085 1067 CDD PHD_TCF19_like 442 492 - -
Gso6g1085 1067 PANTHER PHD FINGER PROTEINS 1 1067 - -
Gso6g1085 1067 ProSitePatterns Zinc finger PHD-type signature. 636 681 IPR019786 -
Gso6g1085 1067 CDD PHD_ATX3_4_5_like 635 681 IPR042011 -
Gso6g1085 1067 Pfam SET domain 936 1041 IPR001214 GO:0005515
Gso6g1085 1067 SUPERFAMILY FYVE/PHD zinc finger 439 496 IPR011011 -
Gso6g1085 1067 Pfam PHD-finger 648 682 - -
Gso6g1085 1067 ProSiteProfiles SET domain profile. 925 1042 IPR001214 GO:0005515
Gso6g1085 1067 Pfam PHD-finger 441 494 IPR019787 -
Gso6g1085 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 497 IPR013083 -
Gso6g1085 1067 SMART PostSET_3 1051 1067 IPR003616 -
Gso6g1085 1067 Gene3D SET domain 821 1067 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1085 Gso-Chr6 10568008 10580119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1085 636 801 C2H2 Transcription Factor Family AT3G14740 34.286 1.23e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g1085 zf-HC5HC2H_2 2.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1085 - - gmx:100811337 2175.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1980 4 50090433 50103555 Gso6g1085 6 10568008 10580119 GST