Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1080 ATGAAAATTCCCAATACCATACTCAAACTCTTCCTCTTCATCCTCTTGAACCCATCCCAGATAGCAATAGCACTAGCAAGTATAGAAGCATGTTTAGACAGCGTTTGCCAAACTCACGAGCCAGTAATCCGATTCCCGTTCCGCATAGAGGGAGAGCAAGAGAATTCATGTGGCCACCCAGGGTTCAGCGTTTCTTGCAACCACAACGGCCAAACACTACTTAACCTATCTTACTGCGGCGAAGAACTCAGAATCCAAAGAATAAACTATGCCGCGCAGCAACTATGGGTGAACGACCCCAACAACTGCCTCCCCAAACGCCTCCTCTCTCTTAACCTCTCCGCCTCTCCCTTCGACGCTGTTTACCGCCAAAAATTCACCTTCTTCAACTGCTCCTTCAACTTGGAGTACCTCGTCCGTCGTTACCGTCCAATAAGTTGTCTCAGCGATTCTCCCAAGTACCTCGTTTTTGCGACGCCTTCTTCGACTGTGTTTGGACACTTGTCGTCTGTGTGTGACTTGGTGGCGACGGTGACGGTGCCGGTTCAGTCGCCGTTTAATGATCGAGTGACGTCGTCAGAACTCAGCGACGATCTGCGATTCTCGTGGGACTCGCCGTCGTGCGGGAGGTGCGAGTCGCACGGTGGACGGTGCGGATTCAAGAGCAACGAGACTTTTGAGCTTGATTGTTCCCTTGTCCCTTCAAAAGGGATTTCCCATGGTGCACGTTACGCCATAGTCATATGCATAGGGGCAACAGCTTTGTTGTGCTGCATGGGAGTATTGAGGTGCATCCACAGCTGGTTAAGAATCGGGAACCAAGATGGGCCTTGGGCTAATGAAACGGTGCCAGATTTTGAGGCTCTAGCGGGCTCACGGCCCACAACAGTCACGGGCCTCGACAGGCCCACAATTGAATCGTACCCAAAAATAGTGTTAGGTGAGAACAGAGGCTTACCAAAGAAGGGTGACAAGACCTGCTCAATATGCCTATCAGAGTACATACCCAAAGAGACAGTGAAAACCATACCAGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCGTGCCCAATTTGCCGAACTTCTCCACGAAAGTTACCACAACCACGTGCTCGATCATCACCACAATAA 1158 0.5043 MKIPNTILKLFLFILLNPSQIAIALASIEACLDSVCQTHEPVIRFPFRIEGEQENSCGHPGFSVSCNHNGQTLLNLSYCGEELRIQRINYAAQQLWVNDPNNCLPKRLLSLNLSASPFDAVYRQKFTFFNCSFNLEYLVRRYRPISCLSDSPKYLVFATPSSTVFGHLSSVCDLVATVTVPVQSPFNDRVTSSELSDDLRFSWDSPSCGRCESHGGRCGFKSNETFELDCSLVPSKGISHGARYAIVICIGATALLCCMGVLRCIHSWLRIGNQDGPWANETVPDFEALAGSRPTTVTGLDRPTIESYPKIVLGENRGLPKKGDKTCSICLSEYIPKETVKTIPECGHCFHAQCIDEWLPLNASCPICRTSPRKLPQPRARSSPQ* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1080 385 Pfam Wall-associated receptor kinase C-terminal 169 230 IPR032872 -
Gso6g1080 385 ProSiteProfiles Zinc finger RING-type profile. 327 369 IPR001841 -
Gso6g1080 385 SMART ring_2 327 368 IPR001841 -
Gso6g1080 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 379 - -
Gso6g1080 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 379 - -
Gso6g1080 385 Pfam Ring finger domain 326 369 IPR001841 -
Gso6g1080 385 SUPERFAMILY RING/U-box 322 373 - -
Gso6g1080 385 Pfam Wall-associated receptor kinase galacturonan-binding 31 99 IPR025287 GO:0030247
Gso6g1080 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 373 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1080 Gso-Chr6 10507208 10509034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1080 29 372 C3H Transcription Factor Family AT2G46495 36.364 1.32e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1080 - - gmx:100818969 807.749