Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1069 ATGAAATATTTATTTATTCTCCTTGTCACTTTCAAGATTATCAAGAGGAAGTTCACACAGCTACGGGAGGCCATGGGGTTTCAAACATCACATAGCACTAAACGGATACAGCAGTCAATTTTCAAAGCAAAGGAGGACTCAATTGATGCTCATGAAAATTCATTAATTCGAAGGACTACACTGAACTTCACTGATCATACCCAAACCAATTCCATGTTCACTCTCTCTAGCTATAATTCATGGGTGGTAAGGCACCCCTCTGCATTGAACACGTTTGATAGGTTGATGAAAGGCGCCAATGGGAAGAGGATCATTGTTTTTTTGGACTACGATGGTACCTTATCACCAATTGTAAATGACCCTGATCGCGCTTTCATGTCTGATGAGATGCGTGCAGCAGTGTATGAAATTGCTACTTACTTTCCAACAGCAATCATTAGTGGAAGAAGCAGAGATAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGCCATGGCATGGACATAATGGCACCTTCAATGCCAGTTACATCTTCTGACGGCAAGCATTTTGGCATTGCCCGTAACACAAATGGCATTGAGGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGATAATAAGAGTACTAAAGAATGAAGTAAAGGAAATAAAAGGAGCAATGATAGAGGACAACGGATTCTGCCTCTCTGTACATTTCCGGCAGGTCCAAGAAAAGGATTATGATGTTTTGGAAGAGAAAGTGAAGTCCGTGCTTGAAAATAATCCACAATTTTGCTTGACAGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAAAGTGGAACAAAGGAAATGCTGTAGAGTATTTTCTTGACACATTAGGATTAAGCAGTTGCAGTGATATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATTATAGTGTCTTCAATTCCAAGAGAAACTAACGCTTTATACTCTTTGCGTGACCCATCTGAAGTACTAATCTTTTTGTCGCGGTTGGCAAAATGGAGGAGAACCTCTTACTAA 1104 0.3949 MKYLFILLVTFKIIKRKFTQLREAMGFQTSHSTKRIQQSIFKAKEDSIDAHENSLIRRTTLNFTDHTQTNSMFTLSSYNSWVVRHPSALNTFDRLMKGANGKRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVYEIATYFPTAIISGRSRDKVKDFVKLNNLYYAGSHGMDIMAPSMPVTSSDGKHFGIARNTNGIEVPFQPAKKFLPAIREIIRVLKNEVKEIKGAMIEDNGFCLSVHFRQVQEKDYDVLEEKVKSVLENNPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCSDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSIPRETNALYSLRDPSEVLIFLSRLAKWRRTSY* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1069 367 Coils Coil 242 262 - -
Gso6g1069 367 Gene3D - 104 191 IPR023214 -
Gso6g1069 367 Gene3D - 203 367 IPR023214 -
Gso6g1069 367 SUPERFAMILY HAD-like 105 363 IPR036412 -
Gso6g1069 367 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
Gso6g1069 367 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 105 322 IPR006379 -
Gso6g1069 367 TIGRFAM T6PP: trehalose-phosphatase 101 361 IPR003337 GO:0003824|GO:0005992
Gso6g1069 367 CDD HAD_TPP 106 352 - -
Gso6g1069 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 366 IPR044651 GO:0004805|GO:0005992
Gso6g1069 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 53 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1069 Gso-Chr6 10405755 10415484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1069 102 360 Trehalose Biosynthesis Gene Families AT1G70290 26.545 8.88e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1069 K01087 - gmx:100809194 732.25