Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1062 ATGGACCACATGGGAGACCCGAAGAGCATCATACATGAGCTGCTACAAGGTTTAGAGTTGGCAAGGCAACTCCAAGTGCATCTCCACATGCCATCTTCGTCCCAAGAAACACGTGACCTATTGATCCAGAAGATCATATCAACATTCGAAAAGGTGCTTGAAATGGTAAAATGGAAAGGGCCAGTGCCAGCGGGTGAGTCATCACAACATCCCCTAGGGGCTGCATTAATCCGAATGTCAGATTCACCTTTGAGCAGTGAAGACTCCGATAGAGATTTGAAGGACCAGGACCCCAATGCTTTCAAAAAGAGAAACACTTTGCCAAGATGGACGAAACAGATTCGAGTTACACCAGGAATGGGAGTGGAAGGACCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGATATCCTTGGAGCCTTGTACCCGAGGGGCTATTACAGATGTACCCACAGAAATGTTCAAGGCTGTATGGCAACAAAGCAAGTGCAAAGATCCGATGAAGACCCCACCATTTTCGAAATCACTTACCGAGGAAAACACACCTGCACAGTGGCCATTAACGTGGGTTCTTCATCACCAATTCCACTAGAAAACCAGGAACCAAGTTTGAACAACACAAATATTCCTCAGCATCAGCATCAGCAGAATATCCTGCAAAGCCATGAACAACAACAAAACGAACTACTTCTGAGCCTGCGGAAAGGGTTGAGAGTCCAAACAGAAAACCTAGATTCCCCCGAACAACCATTAGTTCCATTCCGTTTCCCTTTGTCCACAAACATAAAAAACGAAAGCCATGTTTTTCCTTCCCCTGTGCTTGAAAACTTCACTTCTCCTTCTTATGTTTCCCCTGCTGCATCAGGAATAGGCCACTTTTCTGTGTCTCCAAGTGGAGTAGTGAACAGCTTTGAAGGGAACCCAAATTTGGCAAATTCTGAGTCTCAGATCAATGATATGATCCCTGCCACTACTACAACTTCAGCAGCTCCAAACTCATCAACCGTTGGCTTAGAGTTTCCCTTTGACCAGTTTGAATTTGATGGCCAGAACTTCACATTCGATAACCCACGGTTTTTCTCTTGA 1095 0.4493 MDHMGDPKSIIHELLQGLELARQLQVHLHMPSSSQETRDLLIQKIISTFEKVLEMVKWKGPVPAGESSQHPLGAALIRMSDSPLSSEDSDRDLKDQDPNAFKKRNTLPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQRSDEDPTIFEITYRGKHTCTVAINVGSSSPIPLENQEPSLNNTNIPQHQHQQNILQSHEQQQNELLLSLRKGLRVQTENLDSPEQPLVPFRFPLSTNIKNESHVFPSPVLENFTSPSYVSPAASGIGHFSVSPSGVVNSFEGNPNLANSESQINDMIPATTTTSAAPNSSTVGLEFPFDQFEFDGQNFTFDNPRFFS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1062 364 SUPERFAMILY WRKY DNA-binding domain 125 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1062 364 MobiDBLite consensus disorder prediction 80 101 - -
Gso6g1062 364 MobiDBLite consensus disorder prediction 84 101 - -
Gso6g1062 364 Pfam WRKY DNA -binding domain 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1062 364 Gene3D WRKY domain 119 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g1062 364 SMART WRKY_cls 126 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1062 364 ProSiteProfiles WRKY domain profile. 121 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g1062 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 362 IPR044810 GO:0003700
Gso6g1062 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1062 Gso-Chr6 10322958 10325226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1062 8 206 WRKY Transcription Factor Family AT5G24110 44.776 2.64e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g1062 WRKY 6.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1062 - - gmx:100812027 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1996 4 50302035 50304503 Gso6g1062 6 10322958 10325226 GST