Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1061 ATGGACGATAATAGCTTATGCGATATTTTCGACGACAAAGAGTTTGGGAGCGACCATTTTGGTGGGGATGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCACCGATTTCCCTCCTCTCATTAACGAAGAAGCTGTTGTTGCAGCAGCTGTCTCCAAAGACATTAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACTGAGCTTGAAACCTCTCCCAAAACCAAGAGACAGAAGCTTACTCCTACTACTCCTGAGGAAGCAAACCCAGATGGACAACAAAAGATGTCTCACATTACCGTTGAACGCAACAGGAGAAAGCAAATGAACGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCCAAGAAGCAAAGAAAAGTCTACTGCGAAGTCCTGAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTAGGAAGCCCCCTTTAAGCCCGAGACTAAACTTGCCTATAAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGCTGCATCAGCAGCAGCATGGCTACAACAACATCATTTCACCAACCATATCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGATAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCTCATGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTCTGAAGATTATAACGGCACTTGAAGATCTTGCGCTTGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA 1050 0.4695 MDDNSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTTDFPPLINEEAVVAAAVSKDINNEDVSRLVSQKSTSSSAPLDSETELETSPKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYCEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLHQQQHGYNNIISPTISNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1061 349 MobiDBLite consensus disorder prediction 64 112 - -
Gso6g1061 349 SMART finulus 114 165 IPR011598 GO:0046983
Gso6g1061 349 MobiDBLite consensus disorder prediction 187 216 - -
Gso6g1061 349 CDD bHLH_AtFAMA_like 111 182 - -
Gso6g1061 349 MobiDBLite consensus disorder prediction 64 83 - -
Gso6g1061 349 MobiDBLite consensus disorder prediction 91 112 - -
Gso6g1061 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983
Gso6g1061 349 PANTHER - 4 348 - -
Gso6g1061 349 Pfam Helix-loop-helix DNA-binding domain 109 160 IPR011598 GO:0046983
Gso6g1061 349 Gene3D - 101 179 IPR036638 GO:0046983
Gso6g1061 349 MobiDBLite consensus disorder prediction 183 223 - -
Gso6g1061 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 177 IPR036638 GO:0046983
Gso6g1061 349 PANTHER TRANSCRIPTION FACTOR FAMA 4 348 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1061 Gso-Chr6 10314530 10319349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1061 8 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.078 2.66e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g1061 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1061 K20558 - gmx:100808130 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1997 4 50308896 50313683 Gso6g1061 6 10314530 10319349 GST