Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1059 ATGGAAGACAGTATCCTATGCAAACACACAGTGCATCACACCGTTACCAAGAAACTCATCTCCCCCAAAAAATCATCCCAAACCAATTCGACGACAGAGCGCAGAATAGTGCGGATTTCATACACTGATCCAGACGCAACCGACTCCTCCAGCGACGAGGAAGGTTTCCCCTTCGTTCGCCAAAGAATGAAGCGCTATGTTAACCAGATTGAAATAGAAACCGCCGCCGCCGAAAAAGTTGTTCGGAAAAGGCCCGCCGGTGAGGCTTGCCGCCGGCCGGCGAAGCTTCACTCCGGGAAGAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGGAAATGGGCGGCGGAGATTCGGGATCCGGCGAGAAGAGTGCGTCTCTGGTTGGGAACCTACGACACCGCCGAAGAAGCTGCTATGGTTTACGACAATGCCGCTATTCGTCTTCGTGGCCCTGACGCGTTAACAAACTTCGTAACGCCGCCGAAAAGAGATTCTCCGTCTCCGTCTCCACCGCCGGCGGCGGCGGAGACTCCGGCGGAGGTTTGCGAGATGAAGGTTGTGGTCACCGAAGAAGCCTCCGGCTCCGGCTACGACTCCAGCGAGGATCATTGCCACCACAACCTCTCCTCTCCGACTTCGGTTCTCCAGTTCCGAAGCAACTCGAGCGAAGAAAATTCCGAGTCTCAGCAGAAAGCAGAACAAGTGTTGAGAGAATGCGAGGGTGAGACAGAAACGAGTTTGTTCGAGGAAACGGGTGAGTTTTTGGCGCTGGATAACATGCCTTTGCCTGCCTGGGATGACGTGTTCAATTTCGAAACGCCAGAGTACCCTCCTCTTCTGTTTCAAGAGGAGGAGAATCTGAATCTACTTCATCAGTCCCAGATGTTGGGCGAAACGGTGCAGTTTTCCTCGGAGGAAGGGTTCAGTGATGAAAGCAGTATCATGCTGGCCGACTCGCTCATAGATTTCGACAGAGCCTGCCCTTCACCATCCTCCTTGTGCCAAGTGGACGATTTCTTCCAAGACATTTTGTTTGCTTCTGATCCTCTCGTTCTGCTCTGA 1062 0.5395 MEDSILCKHTVHHTVTKKLISPKKSSQTNSTTERRIVRISYTDPDATDSSSDEEGFPFVRQRMKRYVNQIEIETAAAEKVVRKRPAGEACRRPAKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPKRDSPSPSPPPAAAETPAEVCEMKVVVTEEASGSGYDSSEDHCHHNLSSPTSVLQFRSNSSEENSESQQKAEQVLRECEGETETSLFEETGEFLALDNMPLPAWDDVFNFETPEYPPLLFQEEENLNLLHQSQMLGETVQFSSEEGFSDESSIMLADSLIDFDRACPSPSSLCQVDDFFQDILFASDPLVLL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1059 353 MobiDBLite consensus disorder prediction 155 180 - -
Gso6g1059 353 MobiDBLite consensus disorder prediction 206 229 - -
Gso6g1059 353 CDD AP2 100 157 IPR001471 GO:0003700|GO:0006355
Gso6g1059 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 6 346 - -
Gso6g1059 353 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Gso6g1059 353 MobiDBLite consensus disorder prediction 192 233 - -
Gso6g1059 353 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Gso6g1059 353 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Gso6g1059 353 SUPERFAMILY DNA-binding domain 101 158 IPR016177 GO:0003677
Gso6g1059 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 346 - -
Gso6g1059 353 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Gso6g1059 353 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Gso6g1059 353 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1059 Gso-Chr6 10265374 10267351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1059 7 275 AP2-EREBP Transcription Factor Family AT4G27950 43.158 2.15e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g1059 AP2 9.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1059 - - gmx:100807598 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1999 4 50347937 50349714 Gso6g1059 6 10265374 10267351 GST