Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1056 ATGGACAAGAAGCTGCCCCTCTTGTTCATTTTTTCAGCTGCCTTGGTGATGGAAGCAGTGTTGTTGGTTAGTGTTGGAGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTGACAACATGAGTCACTCTCCTCATGTCAACTGGGATGAGAACTCTTCTGTTTGCCAAAGCTGGAGAGGAGTGATTTGCAACTCCGACAAGTCCCGAGTCATAGAACTTCGATTGCCTGGAGCTGGGTTGAGTGGTCCAATCCCTCCCAACACTCTGAGTCGCCTCTCGGCACTCGAGGTTGTTAGTCTTAGATCAAATGGTATAAGTGGCCCTTTCCCTCATGGTTTCTCTGAGCTGAAAAACTTGACCAGCCTCTTTCTCCAATCCAACAACATTTCTGGACAATTACCATTGGATTTTTCGGTTTGGAATAACCTTAGTGTTGTCAATTTGTCAAACAATTCCTTCAATGAGAACATCCCCTTTTCAATTTCAAAACTGACTCATCTCACCTCATTAGTCCTTGCCAACAACTCCCTTTCGGGTCAGATTCCTGATCTCGATATTCCAAGCCTGCGGGAGCTGAATTTGGCCAACAATAACCTTAGTGGGGCTGTGCCTAAATCCCTTCTTAGATTTCCTAGTTCGGCCTTTGCCGGTAACAATCTTACATCAGCAGATGCTCTCCCTCCAGCTTTTCCTATGGAGCCACCGGCTGCCTATCCAGCAAAGAAATCGAAAAGACTCGGTGAACCTGCACTGTTGGGTATCATCATTGGTGCTTGTGTGTTGGGATTTGTGGTGATTGCAGGTTTCATGATTTTGTGCTGCTATCAGAATGCTGGTGTAAATGCGCAAGCAGTAAAATCAAAGAAAAAACAAGCCACTCTGAAAACAGAATCTTCTGGAAGTCAAGACAAAAACAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGATTTGTTGAGAGCTTCTGCTGAAATTCTTGCAAAGGGTACCTTTGGCATGACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGCGGTGAAGAGGTTGAAGGAGGTCACAGTTGGAAAACGAGATTTTGAACAGCTGATGGAGGTGGTGGGGAAAATTAAGCACGAAAATGTGGATGCAGTGAGGGCATATTATTATTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACAAGGCAGTGTTTCTGCAATGTTACATGGCAAAGGAGGGGAATGCAGAAGTTCTTTAGACTGGGATAGCCGCTTGAGAATTGCAATTGGTGCAGTCAGAGGCATTGCTCACATCCACGCTCAACATGGAGGGAAACTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATATGGATGCATATCTGATATTGGCTTGGCAACATTGATGAGTCCAATACCCATGCCAGCAATGAGAGCAACTGGATACCGTGCACCGGAAGTAACAGACACGCGCAAAGCAACTCATGCATCGGATGTGTACAGCTTTGGGGTGCTGCTACTTGAGCTTCTGACTGGGAAATCCCCCATAAACAGCACAGAAGGTGAGCAGGTTGTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAATTGTTGAGGTATCCAAACATAGAGGAAGAAATGGTGGTGATGCTACAAATAGGGATGGCTTGTGCTGCAAGAATACCGGATCAGAGACCAAAGATGCCTGACTTGGTGAGAATGATAGAGGAGATTCGTCGAGTAAATACGCCAAATCCACCATCCACTGAGTCTAGATCAGAAGTTTCTACACCAACCCCTCGTGCAGTTGACATTCCTTCTACCTCTGTTCAACAATGA 1902 0.4495 MDKKLPLLFIFSAALVMEAVLLVSVGAEPVEDKQALLDFLDNMSHSPHVNWDENSSVCQSWRGVICNSDKSRVIELRLPGAGLSGPIPPNTLSRLSALEVVSLRSNGISGPFPHGFSELKNLTSLFLQSNNISGQLPLDFSVWNNLSVVNLSNNSFNENIPFSISKLTHLTSLVLANNSLSGQIPDLDIPSLRELNLANNNLSGAVPKSLLRFPSSAFAGNNLTSADALPPAFPMEPPAAYPAKKSKRLGEPALLGIIIGACVLGFVVIAGFMILCCYQNAGVNAQAVKSKKKQATLKTESSGSQDKNNKIVFFEGCNLAFDLEDLLRASAEILAKGTFGMTYKAALEDATTVAVKRLKEVTVGKRDFEQLMEVVGKIKHENVDAVRAYYYSKEEKLIVYDYYQQGSVSAMLHGKGGECRSSLDWDSRLRIAIGAVRGIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCISDIGLATLMSPIPMPAMRATGYRAPEVTDTRKATHASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVVMLQIGMACAARIPDQRPKMPDLVRMIEEIRRVNTPNPPSTESRSEVSTPTPRAVDIPSTSVQQ* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1056 633 MobiDBLite consensus disorder prediction 603 633 - -
Gso6g1056 633 Pfam Leucine rich repeat 87 132 IPR001611 GO:0005515
Gso6g1056 633 Gene3D Transferase(Phosphotransferase) domain 1 404 616 - -
Gso6g1056 633 PANTHER LRR RECEPTOR-LIKE KINASE 16 625 - -
Gso6g1056 633 Gene3D Ribonuclease Inhibitor 30 233 IPR032675 -
Gso6g1056 633 SUPERFAMILY L domain-like 45 213 - -
Gso6g1056 633 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Gso6g1056 633 MobiDBLite consensus disorder prediction 600 633 - -
Gso6g1056 633 PANTHER OS05G0588300 PROTEIN 16 625 - -
Gso6g1056 633 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Gso6g1056 633 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Gso6g1056 633 Pfam Protein tyrosine and serine/threonine kinase 332 593 IPR001245 GO:0004672|GO:0006468
Gso6g1056 633 ProSiteProfiles Protein kinase domain profile. 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1056 Gso-Chr6 10231902 10235721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1056 21 620 Receptor kinase-like Gene Family AT4G23740 55.288 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso6g1056 PK_Tyr_Ser-Thr 5.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1056 - - gmx:100809359 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2002 4 50376559 50380096 Gso6g1056 6 10231902 10235721 GST