Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1048 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATTTCCATGTGTCCATCCATCTCTGTAGCTCTGAACCAGGAAGGCCTCTCTCTACTTTCATGGCTTTCAAGCTTCAACTCCTCCAACTCCGCTACGGCCTTCTCTTCATGGGATCCAACAAACAAAGATCCTTGCACATGGGACTACATAACATGTTCCAAAGAAGGGTATGTGTCAGAGATCATAATAACATCCATTGATCTACGTAGCGGCTTCCCCTCACGGCTCAATTCTTTTTACCACCTCACCACTCTTATCATCTCAAATGGAAATCTCACTGGTCAGATTCCAAGTTCAGTGGGAAACTTGTCCTCTTTGGTCACTTTGGACCTTAGCTTCAATGCTTTATCAGGAAGTATTCCGGAAGAAATAGGAAAGCTATCTAATCTGCAGTTGTTGCTGCTGAATTCAAATTCCTTGCAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAAGGCTTCGGCATGTGGCGCTTTTCGACAACCAGATCTCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGGGCTCTTGAAACACTAAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATCCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCGGTTACTGGGGTTTCCGGGGAGATTCCACCAAGTATAGGAGAGCTTAAGAATCTCAAGACAATTTCTGTCTACACAGCACACCTCACAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAGTATTCCTTATGAATTAGGCTCCATGCAAAGCCTCAGGAGGGTGTTGCTGTGGAAGAACAATTTAACTGGCACCATTCCAGAGAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTCTGCGGGGTCAGATACCTGTGACTCTCAGTAGTCTACTCTTGTTGGAGGAGTTTCTTTTGTCTGATAATAATATTTATGGAGAAATACCTTCCTATATTGGCAACTTTTCCAGGCTGAAGCAAATAGAATTGGATAACAACAAATTCTCTGGGGAGATTCCACCTGTTATAGGGCAACTGAAGGAACTCACACTCTTCTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTCGATCTTTCGCACAATTTCCTTACTGGTTCCATTCCAAGTTCACTCTTTCATCTAGGGAACTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCAGATATTGGAAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCGAACAACTTTACCGGTCAAATTCCATCAGAAATAGGTCTTTTAAGCAGTCTGACCTTTCTTGAGTTGTCAAATAATCTATTCAGTGGAGATATTCCCTTTGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGCAAGGAACCATTCCTTCCTCGTTGAAATTCCTAGTTGATCTTAATGTCTTAGATCTTTCTGCAAACAGAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTACATCTCTAAATAAGTTGATTCTGAGTGGAAACCTTATCTCTGGTGTGATCCCTGGGACACTGGGGCCGTGTAAGGCTTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCTGATGAGATTGGTTATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCCGAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGATCTCTCTCACAACAAGCTCACAGGTACACTCACAGTACTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTACAATGGTTTTTCTGGTTCTCTTCCTGATACGAAGTTCTTCCGGGATATACCTGCTGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGCCATGCAAGTGAAAATGGTCAAGGCTTCAAGTCAATAAGAAATGTTATTATCTATACTTTCCTTGGGGTGGTTTTAATTTCTGTTTTTGTCACTTTTGGAGTAATTTTAACTCTCAGGATTCAAGGGGGAAATTTTGGAAGGAATTTTGATGGAAGTGGTGAAATGGAATGGGCTTTCACTCCATTCCAAAAACTCAACTTCTCCATCAATGACATTTTGACGAAGTTGTCAGAATCAAACATTGTGGGAAAGGGTTGCTCGGGAATTGTTTATCGTGTGGAGACTCCAATGAAGCAGACTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAAGAAGAGCCACCAGAGAGAGATCTCTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACATAAGAATATAGTAAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTATTATTTGATTATATATGCAACGGGAGTTTGTTCGGATTACTCCATGAAAATAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGTAGCTCATGGTCTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATAGGGACATTAAAGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTCCTTGCAGATTTTGGCCTTGCAAAACTCGTGAGTTCCTCAGAGTGTTCAGGAGCATCTCATACAATTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGCTATGGTGTTGTGCTCCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGGATTCCAGAGGGTGCCCACATTGCCACATGGGTTAGCGACGAAATCCGAGAGAAGAGAAGAGAATTTACATCTATCCTTGACCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAGGTTCTAGGAGTGGCTCTCCTATGTGTGAATCCCTCCCCGGAAGAACGACCTACTATGAAAGATGTAACTGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAGAAACCAAATTTTCTCCATAAAAGCGTGGTTACCACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTGTATAG 3270 0.4174 MSSNALTLFILFLNISMCPSISVALNQEGLSLLSWLSSFNSSNSATAFSSWDPTNKDPCTWDYITCSKEGYVSEIIITSIDLRSGFPSRLNSFYHLTTLIISNGNLTGQIPSSVGNLSSLVTLDLSFNALSGSIPEEIGKLSNLQLLLLNSNSLQGGIPTTIGNCSRLRHVALFDNQISGMIPGEIGQLRALETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTISVYTAHLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSMQSLRRVLLWKNNLTGTIPESLGNCTNLKVIDFSLNSLRGQIPVTLSSLLLLEEFLLSDNNIYGEIPSYIGNFSRLKQIELDNNKFSGEIPPVIGQLKELTLFYAWQNQLNGSIPTELSNCEKLEALDLSHNFLTGSIPSSLFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPSEIGLLSSLTFLELSNNLFSGDIPFEIGNCAHLELLDLHSNVLQGTIPSSLKFLVDLNVLDLSANRITGSIPENLGKLTSLNKLILSGNLISGVIPGTLGPCKALQLLDISNNRITGSIPDEIGYLQGLDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNGFSGSLPDTKFFRDIPAAAFAGNPDLCISKCHASENGQGFKSIRNVIIYTFLGVVLISVFVTFGVILTLRIQGGNFGRNFDGSGEMEWAFTPFQKLNFSINDILTKLSESNIVGKGCSGIVYRVETPMKQTIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHENRLFLDWDARYKIILGVAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTIAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIATWVSDEIREKRREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKSVVTTNPKAAVHCSSFSRSCEPLIIESTSSSV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1048 1089 Pfam Protein kinase domain 766 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1048 1089 ProSitePatterns Protein kinases ATP-binding region signature. 770 798 IPR017441 GO:0005524
Gso6g1048 1089 Gene3D Ribonuclease Inhibitor 429 693 IPR032675 -
Gso6g1048 1089 Gene3D Ribonuclease Inhibitor 23 221 IPR032675 -
Gso6g1048 1089 SMART serkin_6 764 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1048 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1060 - -
Gso6g1048 1089 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Gso6g1048 1089 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Gso6g1048 1089 SUPERFAMILY RNI-like 327 664 - -
Gso6g1048 1089 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Gso6g1048 1089 Gene3D Ribonuclease Inhibitor 222 325 IPR032675 -
Gso6g1048 1089 ProSiteProfiles Leucine-rich repeat profile. 408 430 IPR001611 GO:0005515
Gso6g1048 1089 Gene3D Transferase(Phosphotransferase) domain 1 843 1062 - -
Gso6g1048 1089 PRINTS Leucine-rich repeat signature 409 422 - -
Gso6g1048 1089 PRINTS Leucine-rich repeat signature 623 636 - -
Gso6g1048 1089 Gene3D Phosphorylase Kinase; domain 1 740 842 - -
Gso6g1048 1089 SUPERFAMILY Protein kinase-like (PK-like) 760 1065 IPR011009 -
Gso6g1048 1089 PANTHER LRR RECEPTOR-LIKE KINASE 3 1060 - -
Gso6g1048 1089 SMART LRR_typ_2 334 358 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 550 573 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 646 679 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 526 549 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 623 642 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 478 502 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 141 165 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 117 140 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 286 310 IPR003591 -
Gso6g1048 1089 SMART LRR_typ_2 430 454 IPR003591 -
Gso6g1048 1089 SMART LRR_sd22_2 382 408 - -
Gso6g1048 1089 SMART LRR_sd22_2 117 146 - -
Gso6g1048 1089 SMART LRR_sd22_2 526 549 - -
Gso6g1048 1089 SMART LRR_sd22_2 623 648 - -
Gso6g1048 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Gso6g1048 1089 Pfam Leucine rich repeat 529 587 IPR001611 GO:0005515
Gso6g1048 1089 Pfam Leucine rich repeat 605 658 IPR001611 GO:0005515
Gso6g1048 1089 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Gso6g1048 1089 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Gso6g1048 1089 Gene3D Ribonuclease Inhibitor 326 426 IPR032675 -
Gso6g1048 1089 ProSiteProfiles Protein kinase domain profile. 764 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1048 1089 SUPERFAMILY RNI-like 85 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1048 Gso-Chr6 10173885 10178055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1048 24 1078 Receptor kinase-like Gene Family AT5G56040 47.461 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso6g1048 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1048 - - gmx:100807225 2095.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2008 4 50434367 50438470 Gso6g1048 6 10173885 10178055 GST