Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1033 ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATAAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAA 1146 0.4634 MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1033 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 344 IPR036291 -
Gso6g1033 381 Pfam Zinc-binding dehydrogenase 207 331 IPR013149 -
Gso6g1033 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Gso6g1033 381 Gene3D - 184 322 - -
Gso6g1033 381 SUPERFAMILY GroES-like 329 378 IPR011032 -
Gso6g1033 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Gso6g1033 381 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 379 - -
Gso6g1033 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Gso6g1033 381 PANTHER ALCOHOL DEHYDROGENASE 5 379 - -
Gso6g1033 381 CDD alcohol_DH_plants 10 378 - -
Gso6g1033 381 Gene3D - 20 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1033 Gso-Chr6 10075232 10078479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1033 38 371 Monolignol Biosynthesis Gene Families AT1G72680 25.664 3.53e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1033 K18857 - gmx:100801918 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1795 4 48165775 48169989 Gso6g1033 6 10075232 10078479 GST