Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1016 ATGAGTATGGATCATAGCCCTCCAGCTTCTGCATCTTACGTGGTGGTTGCATGTGATGCCACTAGGGACCGCACTGAACACGAGATCAAACTCGTTGTTGATCATGTTCGGGCCAGGCGTGTCTTTCTCTCTTCTGGTGACAAGTTGCTTGTGCTATGTGTCTTGCATAAGGTGTCTCACCCTATGGGGTACCAGACATTAGCATGTCCCGAGTCTTTTGCTGGAACCAACTTTCGTGCAATGGAGGATGAAGTCAAGAAGAAAGTTGATGCATATGCAACTGAGCTTTTGTCAAGTTATGAAGATTTTGAAAGTGAAGGGGTCAGTATCGAAGTTAAAGTCACCGCGGGATTTCCAATTAAACATGTTGTTTTACAAGAGGTTACAAACTATAATGCATCTTGGGTAATACTTGACAGACATCTTCGGCGCGACCTGAGGTACCACCTTAACAAGATGCCATGCAAGGTTGCATTGGTTAAAGATGACTTGTCTCTGGATATCTGGAGATCTCATTATGTACATGAGACAAAGATCACTGAAACAAAATGTGTATATTCTTTGTCAAAGTTTGTGTCGCTAGCAGATTGTCATAGTGTTGAAGACATTGAGCATTCTATTATCTCTTGCAAAAGCTATCCCCATTCTATATTTTCTTCTGATGGCTCTAGTACCATTAGGAGCTATACAAAGCAGTCATCATATGGTAACAGGTCACGGGAGAACAGTTCCTTATCAGATTTTGGATCTTCTTCTAAGCAAGAAAGAACAGGACTAAACATCAAAGGAGAATGTAGGCTCATTACTTCTCAGATTGACCAAAAGCAAAACCAAAGTGGCTTTCTGCCAAAACATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTGTCTATCAAGGAGTCAATGAAGTTCAGCTACTCTGACATACAAAATGCAACAAATGATTTTTCAAAGGATAACTTATTAGGTGAAGGTGGATATGGTCACGTATATAAGGGTGTGCTTAAAGATGGACAACAAATTGCAGCAAAGGTAAGGAAACAAGAAAGTTCACAAGGATTTTCAGAATTTCATTCTGAGGTGTACGTCTTAAGTTTTGCTCGACACAAGAACATAGTGATGCTGTTGGGCTATTGTTGCAAAGAAAATAAAAACATCCTGATTTATGAATTTATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGAAGCTGTTCTTGAGTGGCACCAAAGGTATGCCATTGCCGTTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGCGACCAAGCAATATCCTTCTCACCCATGATTTTGTTCCCATGCTAGGTGACTTTGGTCTTGCCAAATGGAAGACTGGTGATGATACTCTACAAACAAGGATAATGGGAACATTAGGATACCTTGCTCCTGAGTATGCTGAAGACGGAATTGTTTCTGTGGGAACAGATGTGTATTCTTATGGCATTATTCTGCTACAATTGATATCAGGGCGCCAGGTTGGCAATTCCAACAATCCAGAACAACAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATGATAAAGAATTTGGCTTTACATGAACTGATTGATACTCATCTAGGGGAATCATATGACACGTATGAACTCTACCTCATGGCTAAAGCAGCATACTTCTGTGTACAAAGGAAACCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGACTTCTTGAGGGAGAAAGTAGCCATTTCCACTCCTTGGAAGATCAATTTGCAACTAATTATAATTTATAA 1839 0.41 MSMDHSPPASASYVVVACDATRDRTEHEIKLVVDHVRARRVFLSSGDKLLVLCVLHKVSHPMGYQTLACPESFAGTNFRAMEDEVKKKVDAYATELLSSYEDFESEGVSIEVKVTAGFPIKHVVLQEVTNYNASWVILDRHLRRDLRYHLNKMPCKVALVKDDLSLDIWRSHYVHETKITETKCVYSLSKFVSLADCHSVEDIEHSIISCKSYPHSIFSSDGSSTIRSYTKQSSYGNRSRENSSLSDFGSSSKQERTGLNIKGECRLITSQIDQKQNQSGFLPKHSDAPLLCTGCGTRTELSIKESMKFSYSDIQNATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKQESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEFICNKSLHWHLFENNEAVLEWHQRYAIAVGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTGDDTLQTRIMGTLGYLAPEYAEDGIVSVGTDVYSYGIILLQLISGRQVGNSNNPEQQQQQSLRQWAEPMIKNLALHELIDTHLGESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFATNYNL* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1016 612 Gene3D Phosphorylase Kinase; domain 1 294 396 - -
Gso6g1016 612 PANTHER OS01G0253100 PROTEIN 12 604 IPR045271 GO:0004714|GO:0006468
Gso6g1016 612 Gene3D HUPs 14 162 IPR014729 -
Gso6g1016 612 Gene3D Transferase(Phosphotransferase) domain 1 397 606 - -
Gso6g1016 612 Pfam Protein kinase domain 322 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1016 612 CDD STKc_IRAK 327 594 - -
Gso6g1016 612 PANTHER RECEPTOR-LIKE KINASE 12 604 - -
Gso6g1016 612 MobiDBLite consensus disorder prediction 220 256 - -
Gso6g1016 612 ProSitePatterns Tyrosine protein kinases specific active-site signature. 442 454 IPR008266 GO:0004672|GO:0006468
Gso6g1016 612 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Gso6g1016 612 SUPERFAMILY Protein kinase-like (PK-like) 305 591 IPR011009 -
Gso6g1016 612 ProSiteProfiles Protein kinase domain profile. 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1016 Gso-Chr6 9864348 9870548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1016 309 593 Trihelix Transcription Factor Family AT5G38560 44.178 2.13e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso6g1016 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1016 - - gmx:100800663 1167.53