Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1008 ATGACTTCATCGCGGGATGATACAAAAGTTGTGCTAGTTGCTTGGTTTCTATTAATGATCTCAGCAATGTCACAAACAATTCATTCCAGCTGCCAAAATAAATGTGGAAGTGTTAACATTCCTTACCCATTTGGTACAGCTGAGGACTGCTACTTGAACAGCAACTTTTATGTTGCGTGTAACACAAGTCACAACCCTCCCAAACCATTTCTGTGGAATGTCACCAAAAGTATTGAGATCTTAGAGGTTTCATTGAATGGCCATTTGAGGATAAAATCCCCTGTAGCTTATGTGTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATCTATGACTTTGCAAGCATTCCCCTTCTCATACACCCAGAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAAGCATCAATGCAACAATTGGGAAAAACTACTCAGCTGGAGGGTGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAGCCAATGGTTCCTGGTTTGGCGTTGGTTTCTGCCAAACCTCTATCCCAAAAAACATCTTGGCATATCAAGCTCGTGTGCTGAGTTTAAATTTGATGCATAGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGACTCTTTCAAGTTCTCCACTGATGACTTCATCAAACTTCAGAAGAGAAAAACCGCTCCCACAGTGCTAGATTGGGCTGTTGGGAATCAAACATGCCAAGAAGCTAAGAAGAATTTGACTAGTTTTGCCTGCCAAGAAAATAGCAAGTGTATTGACTCTGACAATGGACCAGGGTACCTTTGCAGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCAAGATATTGATGAGTGTGCCAATCTGAGTCTAAATGACTGTTCAGATCTTTGCATTAATCTACCTGGGAGCTATAATTGTTCTTGTCCTAAGAGCAAGGGGTACCAGGGAGATGGCAGAAAAGGAGGAAGTGGCTGCGTCTCGAATCTACAACATGTGGTTAATCAGATTGTGATAGGCACTGGCATAGGCCTTATGCTGTTGTTAATTGGTAGTGGCTGGCTATACCATGTGTTTCGTAAAAGAAAAAGAGTGAGACTCACAACAAGATATTTCAAGCAAAATGGTGGCTTAATGTTACAGCAGCAAATTTCAAACATGGAAGGATCATCTGAGAGAGCCAAAATTTTCACTGCAAGAGAGCTAAAGAAAGCCACCGAAAACTTTCACGAGAGCAGAATCATTGGCAGAGGAGGATACGGTACAGTTTATAGGGGAATACTTCCAGATGACCATGTTGTTGCTATCAAGAAATCAAAACTAGTAGACCACAGCCAAACCGAACAATTCATCAATGAAGTGGTTGTACTGTCCCAAATTAACCACAGAAATGTTGTCAAACTCCTAGGTTGCTGTCTGGAGACAGAAATGCCACTTCTGGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATTCACAACAAAAACACCACACTTCCTTGGGAAGCACGTCTAAGAATAGCAGCAGAAACAGCTGGTGTGCTTGCATACTTGCATTCTGCTGCCTCCATACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACAGCTAAGGTTTCTGACTTTGGAACCTCGAGATTGGTTCCACGTGACAAGTGTCAATTGACAACGTTGGTTCAAGGAACTCTAGGGTACCTTGACCCTGAGTACTTTCAGAGCAGCCAACTAACCGAGAAAAGCGATGTTTATAGCTTTGGTGTCGTGCTTGCAGAGTTGCTAACCGGAAGAAGGGCACTTTCTTTTGACATGCCAGAGGAGGAGAGAAACTTAGCCTTGTATTTCCTTTCAGCTGTGAAGGATGATTGCTTGTTCGAAATTGTTGAGGATTGTGTGAGTGAGGGAAATAGTGAGCAAGTAAAGGAAGTTGCTAACATTGCTCAATGGTGCTTGAGGCTTAGAGGGGAGGAAAGACCTACCATGAAAGAAGTGGCAATGGAATTGGATAGTCTTAGAATGATGACAACAACAACAACTACATGGATTAATGCTACATCAAATTCAACAGAATATGTGATTGGTGAAAGGTCAGGTCTAAGTCTAACAGAAACAACAGACTATGCTAATTGTCATTATACTTGTAATACATGTGCTGGGCACGAGGATGAAACCATTTGCAACGATGTGATGTCACCGATATGGGATGGTCGATGGCTTGACCAGAAGAACCTAAAAAACAAAGTCATGGCTGTGTGCTCAATAATGCTGCTGCTGCTACTTTTTACGCTTCTCATTGCAACAACTAAAACTCAACCCATGTCAAAGCCAAACTGTCCAACAAACTGTGGCTCTGTCACGGTTCCCTTCCCATTTGGCATGACTGAGGATTGTTCCTTGGACGCTTCATTTCTCGTCTCCTGCAACCGAACCTCTTCTTCATCACATGACCTTTTCTTGCCACAAACCAACATAAGCGTCCTAAACATCTCACTCAATGGCGAACTGCAGATTTCATGGCCAGTAGCCAGCGACTGCTACGCCGAAAGAGGTAAACTCTTGAGTCAAACAATCCAAGACCTAAGTATTACAAGCTTCCAGCTCTCTTCGAACCGAAACATGTTCACCGTACTCGGGTGCGACACGCTTGGACTAGTGGTGGGAACCGATTCGGATGGAAGGAACTACACCACCGGATGTGTGTCCCTGTGCAACAGGCTCCAAGACATCGAAACGAACGGGTCTTGTTCCGGCACCGGTTGTTGCGAGACTTCGATCCCGCGCGGGTTGTCGGGGTTCTCCTACGGTTCTTCGAGCGTGTACAACCACACAAGCGTGATTGACTTCAACCCGTGCGGGCATGCGTTCCTGGTAGAACGTGGGGCCTACAACTTCTCCTCCACGGACCTCTTCAAGTTCGAGAAGACAACGTTTCCCGCTGGGGTGGATTGGGTAGTGAAGAACCAAACGTGCCAAGAAGCTAAGAAAGAGGTTTCAAGTTATGCGTGTAAATCAGAAAACAGTGAATGTTACCATTCATTCGAGGGATCTGGTTATCTTTGTAGCTGCTCAAATGGTTTCGAAGGAAACCCTTACCTACTTGGTGGTTGTCAAGATGTTAATGAATGCATGGGATCCACGGCCGATTGCTTTGATGGGGCAATATGTAATAACCTTCCTGGTGGTTATAATTGTTCATGCCCGGAAGGATTTGAAGGAGATGGGAAAAATGATGGATCAAGATGCAGTCCCAAATCTAGCACCAATTCAAGGAAAGCGATCATCATATTGATAATTGCTTTGAGTGTGAGTGTAAGTCTTGTAACACTACTTGGGGGAAGCTTTTATGTGTATTGGGTATCGAAGAAAAGAAAGATCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCCTTTTCTTACAACAACATATGTCTAGGCATAAAGGATCAATTGAAACGGCCAAAGTCTTCACTATTGAGGAGTTAAAAGATGCCACCAACAACTTTGATGAGGACAAGATCCTAGGTCAAGGAGGCCAAGGAACAGTTTACAAAGGAGTATTGCTAGATAATAGAATTGTGGCAATCAAAAAGTCCAAAATCAGTGATCCAAATCAGATTGAGCAATTCATCAATGAGGTGATTGTGCTTTCCCAAATCAACCATAGGAATGTGGTAAAGCTTTTGGGTTGTTGTTTAGAGACAGAAGTTCCTATGCTTGTTTATGAATTTATTCCCAATGGTACTATTTATGAGCACCTTCATGATTTTAATTGTTCTCTAAAACTTACATGGAAAACAAGACTGAGAATCGCAACAGAAACTGCTGGGGCCTTGGCTTATTTGCATTCTGCTACTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATATTACTTGATCACAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAGAATTTTCCCCCTTGATCAAACTCAATTAACCACTCTGGTGCAAGGGACATTAGGGTATCTCGACCCAGAATACTTTCATACAAGTCAATTGACCGAGAAGAGTGATGTTTATAGTTTTGGTGTTGTCCTAGCAGAGCTACTGACAGGAAAGAAGGCACTTTCATTTGATAGGCCAGAGGCTAATAGAAACCTTGCAGCGTACTTTGTTTCTTCAATGAAAACAGGCCAATTACTTGACATTGTGGACAACTACATATCACATGAGGCAAATGTTGAACAACTAACAGAAGTTGCCAATATTGCAAAGCTATGTTTAAAGGTGAAAGGAGAGGATAGACCCACCATGAAAGAAGTTGCAATGGAACTTGAGGGACTTCAAATTGTGGGAAAGCATCGATGGGGAAGTGTTAGTTCATCTTCAGAAGAGACAGAAAACTTGCTACAAAAAGCATCATCTGTTCTCGCTGGTGAAGAAGGCATTAGTGGAAGTGGAATTAATTCTGGTTTTGATAGCTTAAACCGATTTTCAGTGTCTTTGGGTGGTGGAAGATGA 4551 0.4232 MTSSRDDTKVVLVAWFLLMISAMSQTIHSSCQNKCGSVNIPYPFGTAEDCYLNSNFYVACNTSHNPPKPFLWNVTKSIEILEVSLNGHLRIKSPVAYVCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFIGIGCDTLSSINATIGKNYSAGGCFSLCSSVESSANGSWFGVGFCQTSIPKNILAYQARVLSLNLMHRDMNIPCSYSLLVEEDSFKFSTDDFIKLQKRKTAPTVLDWAVGNQTCQEAKKNLTSFACQENSKCIDSDNGPGYLCRCLEGYVGNAYLHGGCQDIDECANLSLNDCSDLCINLPGSYNCSCPKSKGYQGDGRKGGSGCVSNLQHVVNQIVIGTGIGLMLLLIGSGWLYHVFRKRKRVRLTTRYFKQNGGLMLQQQISNMEGSSERAKIFTARELKKATENFHESRIIGRGGYGTVYRGILPDDHVVAIKKSKLVDHSQTEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNKNTTLPWEARLRIAAETAGVLAYLHSAASIPIIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQSSQLTEKSDVYSFGVVLAELLTGRRALSFDMPEEERNLALYFLSAVKDDCLFEIVEDCVSEGNSEQVKEVANIAQWCLRLRGEERPTMKEVAMELDSLRMMTTTTTTWINATSNSTEYVIGERSGLSLTETTDYANCHYTCNTCAGHEDETICNDVMSPIWDGRWLDQKNLKNKVMAVCSIMLLLLLFTLLIATTKTQPMSKPNCPTNCGSVTVPFPFGMTEDCSLDASFLVSCNRTSSSSHDLFLPQTNISVLNISLNGELQISWPVASDCYAERGKLLSQTIQDLSITSFQLSSNRNMFTVLGCDTLGLVVGTDSDGRNYTTGCVSLCNRLQDIETNGSCSGTGCCETSIPRGLSGFSYGSSSVYNHTSVIDFNPCGHAFLVERGAYNFSSTDLFKFEKTTFPAGVDWVVKNQTCQEAKKEVSSYACKSENSECYHSFEGSGYLCSCSNGFEGNPYLLGGCQDVNECMGSTADCFDGAICNNLPGGYNCSCPEGFEGDGKNDGSRCSPKSSTNSRKAIIILIIALSVSVSLVTLLGGSFYVYWVSKKRKIIKLKEQFFQQNGGLFLQQHMSRHKGSIETAKVFTIEELKDATNNFDEDKILGQGGQGTVYKGVLLDNRIVAIKKSKISDPNQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPMLVYEFIPNGTIYEHLHDFNCSLKLTWKTRLRIATETAGALAYLHSATSTPIIHRDVKTTNILLDHNLIAKVSDFGASRIFPLDQTQLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEANRNLAAYFVSSMKTGQLLDIVDNYISHEANVEQLTEVANIAKLCLKVKGEDRPTMKEVAMELEGLQIVGKHRWGSVSSSSEETENLLQKASSVLAGEEGISGSGINSGFDSLNRFSVSLGGGR* 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1008 1516 CDD STKc_IRAK 1191 1458 - -
Gso6g1008 1516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1306 1318 IPR008271 GO:0004672|GO:0006468
Gso6g1008 1516 Pfam Protein tyrosine and serine/threonine kinase 1188 1455 IPR001245 GO:0004672|GO:0006468
Gso6g1008 1516 Pfam Calcium-binding EGF domain 1053 1096 IPR001881 GO:0005509
Gso6g1008 1516 Pfam Calcium-binding EGF domain 289 323 IPR001881 GO:0005509
Gso6g1008 1516 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1008 1516 ProSitePatterns Calcium-binding EGF-like domain signature. 289 314 IPR018097 GO:0005509
Gso6g1008 1516 Gene3D Plasmodium vivax P25 domain 953 1103 - -
Gso6g1008 1516 Gene3D Laminin 240 291 - -
Gso6g1008 1516 SUPERFAMILY Protein kinase-like (PK-like) 402 698 IPR011009 -
Gso6g1008 1516 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Gso6g1008 1516 Gene3D Phosphorylase Kinase; domain 1 380 491 - -
Gso6g1008 1516 Pfam Wall-associated receptor kinase galacturonan-binding 31 88 IPR025287 GO:0030247
Gso6g1008 1516 Pfam Wall-associated receptor kinase galacturonan-binding 793 848 IPR025287 GO:0030247
Gso6g1008 1516 ProSiteProfiles EGF-like domain profile. 1053 1097 IPR000742 -
Gso6g1008 1516 CDD EGF_CA 289 325 - -
Gso6g1008 1516 CDD STKc_IRAK 422 686 - -
Gso6g1008 1516 SUPERFAMILY EGF/Laminin 288 323 - -
Gso6g1008 1516 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1070 1081 IPR000152 -
Gso6g1008 1516 CDD EGF_CA 1053 1088 - -
Gso6g1008 1516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Gso6g1008 1516 Gene3D Transferase(Phosphotransferase) domain 1 1261 1473 - -
Gso6g1008 1516 Gene3D Transferase(Phosphotransferase) domain 1 492 706 - -
Gso6g1008 1516 ProSiteProfiles Protein kinase domain profile. 1185 1467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1008 1516 SMART egfca_6 289 334 IPR001881 GO:0005509
Gso6g1008 1516 SMART egfca_6 242 288 IPR001881 GO:0005509
Gso6g1008 1516 SMART egfca_6 1053 1097 IPR001881 GO:0005509
Gso6g1008 1516 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524
Gso6g1008 1516 Gene3D Phosphorylase Kinase; domain 1 1155 1260 - -
Gso6g1008 1516 SUPERFAMILY EGF/Laminin 1051 1097 - -
Gso6g1008 1516 SUPERFAMILY Protein kinase-like (PK-like) 1167 1456 IPR011009 -
Gso6g1008 1516 SMART egf_5 292 334 IPR000742 -
Gso6g1008 1516 SMART egf_5 241 288 IPR000742 -
Gso6g1008 1516 SMART egf_5 1056 1097 IPR000742 -
Gso6g1008 1516 SMART egf_5 1004 1052 IPR000742 -
Gso6g1008 1516 ProSitePatterns Calcium-binding EGF-like domain signature. 1053 1079 IPR018097 GO:0005509
Gso6g1008 1516 SMART serkin_6 1185 1461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1008 1516 SMART serkin_6 416 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g1008 1516 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 708 - -
Gso6g1008 1516 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 764 1478 - -
Gso6g1008 1516 Gene3D Laminin 292 331 - -
Gso6g1008 1516 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 764 1478 IPR045274 GO:0007166
Gso6g1008 1516 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 708 IPR045274 GO:0007166
Gso6g1008 1516 ProSiteProfiles EGF-like domain profile. 246 288 IPR000742 -
Gso6g1008 1516 ProSiteProfiles Protein kinase domain profile. 416 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1008 Gso-Chr6 9781614 9792584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1008 10 709 Receptor kinase-like Gene Family AT1G21230 44.708 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso6g1008 PK_Tyr_Ser-Thr 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1008 - - var:108330433 2496.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2043 4 50811892 50824666 Gso6g1008 6 9781614 9792584 GST
Gso14g1245 14 30278969 30291786 Gso6g1008 6 9781614 9792584 PCT
Gso13g0198 13 11059025 11063459 Gso6g1008 6 9781614 9792584 PCT
Gso6g1008 6 9781614 9792584 Gso14g1245 14 30278969 30291786 PCT
Gso6g1008 6 9781614 9792584 Gso13g0198 13 11059025 11063459 PCT