Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1004 ATGGGGACTGAGGATGGAACAAGCGATGCTGATAAAACGGAATTTGATGAACGAGTTCAGTGTTTGAAAGGTGCCGCAATGGATGGTGGGGTGGCAATTGTGGATGGGAATTGTGTTTCTGAAGAGGGCCAGCTCTTGAAAAGTGAAGCCATGAATGTTGGGGTTGCAATTGCTGATGAAAATGGTGTTGCTGAAGAGGGTAGGATCTGGAAAAGTGAAACCTTTTGTAATCGGGTGGCAGTTGCAGATAAAGGGGACTCTGGTGGAGTTGAATGTTTGCAAACATATAAGAGGCGTAAGAAGTCAAGTTCAAAAGGAGAAGTTCAGGAACAATGCAGAAAAAACGTGGAAACTTCAACTCACATAGCAGATCAGGATGTGACGAAACCATGTGATGTAGCCTTATGCAATACTTCAGATGATTGCTCCCATGGACAGTGGGGAAATATTGTGCTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGCATAGAGGGGTGCATAAGGGAAGCACTTATTCATTATCCTAAACATAATCATACCACTACAGTTATGGAAACTTTTAAAATTGACAAAGATGGACAAGAATGCTCTTTGCAATTTGAGCCACTTTCTCATAGAACAGAGAAGGAAGCTAATGGGCATGCAGATGTCATGTGTAATGGAGGTTCTAGTGAATCACCTGACCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGTAATGTTTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTACTTGACTTTACCGTCATGAATTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACGCTGGTAATGAGATTGTTGCTCTTGCCAAGAGCCTCTCTAACATGTCAAGAACTTCCTACTCTGAGCTGGTGGGAATTCCAGCACAGAGCACATTTCAAGATGAGAAGCAAGTGTACTCCAACCAGGAATTTGACTGTTGCATGAAACCAGAACAGACACAAGCATGTGCTATGTACAAAATTTGCAGTTGCAAGTGTTGTGGAGAGAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAAGAGATATACCATGTGTCCTGTATTGAGCCTGCAGTGAAAGAAATAATACCTCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAATGTGATTGAATCTCTCCATGAGAATTGTGTGCTATGTGAAAGGTTAAATGATGCAAAGACCCTGGATGATGTAATTGGTGATGGAAGCTTTCCTACAATTGAGGAAACACAAAATGAATTTGAAGAGAATTCAAATTGCACCTCTGATGGAATTCAAGTTTCCATAGGTGAGGAAAAAACACCCAATTGCAAGATATGTGAAAATGAAGTGGATGGTGGAAAAATAAAAATATGTGGCCATCGGTTTTGCTCCAATAAATACTACCATGTAAGGTGTTTAACAATTAATCAGTTGAAGTCATATGGTCATTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAACTGATCAAGATGATGATCGGATTGTTCTGTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCGCGGACTTCTATTCCAAGAGGGAACTGGTTCTGCAGAAAATGTGATGCTGGAATACAAGCAATCCACCAGGCTAAAAAGGCATATGAGTTTAACAAGCCAAGAAGAAATGGTGAAGATGCTGCAAAGCCAAATGCCAATCTTGAAAAGAAACACAACAATAAACGTGCACGGGAATTGGAAAGTGGTGGAGCAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAAAGAGGCGGCAAGCCACATCAAGTTACAGAGAACATGA 1953 0.4112 MGTEDGTSDADKTEFDERVQCLKGAAMDGGVAIVDGNCVSEEGQLLKSEAMNVGVAIADENGVAEEGRIWKSETFCNRVAVADKGDSGGVECLQTYKRRKKSSSKGEVQEQCRKNVETSTHIADQDVTKPCDVALCNTSDDCSHGQWGNIVLKHLYQSLGDGNGGIEGCIREALIHYPKHNHTTTVMETFKIDKDGQECSLQFEPLSHRTEKEANGHADVMCNGGSSESPDHGVTEMCQRVLCNVLTSEKFSSLCKALLENFQGMKPESVLDFTVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVALAKSLSNMSRTSYSELVGIPAQSTFQDEKQVYSNQEFDCCMKPEQTQACAMYKICSCKCCGEKADGTDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCANCTANVIESLHENCVLCERLNDAKTLDDVIGDGSFPTIEETQNEFEENSNCTSDGIQVSIGEEKTPNCKICENEVDGGKIKICGHRFCSNKYYHVRCLTINQLKSYGHCWYCPSCLCRVCLTDQDDDRIVLCDGCDHAYHIYCMKPPRTSIPRGNWFCRKCDAGIQAIHQAKKAYEFNKPRRNGEDAAKPNANLEKKHNNKRARELESGGAMDMLLTAANTLNFEEKEAASHIKLQRT* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1004 650 Gene3D - 259 418 - -
Gso6g1004 650 PANTHER HISTONE ACETYLTRANSFERASE 149 638 - -
Gso6g1004 650 PANTHER D4, ISOFORM A 149 638 - -
Gso6g1004 650 ProSiteProfiles Zinc finger PHD-type profile. 526 576 IPR019787 -
Gso6g1004 650 MobiDBLite consensus disorder prediction 592 618 - -
Gso6g1004 650 SUPERFAMILY FYVE/PHD zinc finger 366 417 IPR011011 -
Gso6g1004 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 579 IPR013083 -
Gso6g1004 650 ProSiteProfiles Zinc finger PHD-type profile. 366 417 IPR019787 -
Gso6g1004 650 SUPERFAMILY FYVE/PHD zinc finger 528 577 IPR011011 -
Gso6g1004 650 Pfam PHD-finger 529 574 IPR019787 -
Gso6g1004 650 Pfam PHD-finger 369 416 IPR019787 -
Gso6g1004 650 SMART PHD_3 479 528 IPR001965 -
Gso6g1004 650 SMART PHD_3 529 574 IPR001965 -
Gso6g1004 650 SMART PHD_3 368 415 IPR001965 -
Gso6g1004 650 SUPERFAMILY FYVE/PHD zinc finger 475 527 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1004 Gso-Chr6 9698448 9705252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1004 528 596 C2H2 Transcription Factor Family AT3G01460 43.478 2.58e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g1004 PHD 3e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1004 - - gmx:100795906 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0194 13 10919184 10936754 Gso6g1004 6 9698448 9705252 PCT
Gso6g1004 6 9698448 9705252 Gso13g0194 13 10919184 10936754 PCT