Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1003 ATGGTACGGAATCGGAGAAGGATGCCTCCGCGGCGGTGCACGGCGTCTATGGGCAGCAGCAACGGGAGCGAGAGCGATGCGTCAGACTTGGTGATGCGGTGCCTCTCGTGCGAGGAGGAATACGACATGGACGACTCGGGAACCTGCAGGGAGTGCTACCAGGAGGCCAACGAGGCTGAGGAGGAGCTCCGCCGCGAGATCGAAGAGCTCAAATCCAAAGTCTCCTTCCTCACTCTCCCCTATCCCAATCTAAACGCTTCCACCGCCGATATCATCCTCGTTCCCGTCGACGACTCCGACGCCGTTCCCATTCCCGCTCACAAGCACCTTCTGGTTAGTCGCTCTCCTGTTTTCAAAGCAATGCTTGAGAACGATATGGCAGAAAGGCGGAGTGGCACCATCAAGATTTCTGACATATCATATGATACCCTTAGTGCTTTTGTTAATTATTTATACACTGCTGAAGCGTCCCTTGATAACGAATTGGCCTGTAACCTGTTGGTTTTAGGAGAAAAGTATCAGGTGAAGCATCTCAAGACATATTGTGAAAAGTATTTGATCGCCAAAATGAATTGGAATAAAGCTATTTCTAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACGAAGTGCGTCCTTGGCAGTGATCTTGGACAACATGGACCTGCTCACTCAAAATGAATGTTATGCGGAGCTGGTGGACACTAATCCTCGTCTTGTTGTGGAAATATATGAAACATATATCGGCAAGCAATTAAATACTGCAGGCGCATTTTAG 783 0.4828 MVRNRRRMPPRRCTASMGSSNGSESDASDLVMRCLSCEEEYDMDDSGTCRECYQEANEAEEELRREIEELKSKVSFLTLPYPNLNASTADIILVPVDDSDAVPIPAHKHLLVSRSPVFKAMLENDMAERRSGTIKISDISYDTLSAFVNYLYTAEASLDNELACNLLVLGEKYQVKHLKTYCEKYLIAKMNWNKAISNYAFAYQYNCKQLRSASLAVILDNMDLLTQNECYAELVDTNPRLVVEIYETYIGKQLNTAGAF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1003 260 PANTHER SPECKLE-TYPE POZ PROTEIN 31 257 - -
Gso6g1003 260 ProSiteProfiles BTB domain profile. 89 160 IPR000210 GO:0005515
Gso6g1003 260 PANTHER GH01369P 31 257 - -
Gso6g1003 260 MobiDBLite consensus disorder prediction 1 26 - -
Gso6g1003 260 Coils Coil 49 73 - -
Gso6g1003 260 Gene3D - 192 259 - -
Gso6g1003 260 Pfam BTB/POZ domain 88 188 IPR000210 GO:0005515
Gso6g1003 260 SMART BTB_4 89 190 IPR000210 GO:0005515
Gso6g1003 260 CDD BACK 195 234 - -
Gso6g1003 260 CDD BTB_POZ_ZBTB_KLHL-like 89 173 - -
Gso6g1003 260 Gene3D Potassium Channel Kv1.1; Chain A 51 191 IPR011333 -
Gso6g1003 260 SUPERFAMILY POZ domain 88 187 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1003 Gso-Chr6 9694141 9696756 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso6g1003 BTB 1.1e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1003 K10523 - gmx:100794118 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2047 4 50887453 50890137 Gso6g1003 6 9694141 9696756 GST