Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0978 ATGGGCGATAGGGTGGAAACGCTTGCCAGATTAGCCCAGTGGAAAATCGACAACTTCGGACTTTGTTCCTACAAAAAATCTGACCCCTTCAAGGTCGGAATCTGGAACTGGTACTTTTCAATAGTGAGGAATAGGTACCTCTACATACATCTTTTTCCAGAACCTTCGCAGGTTTTGAAGGATAACCCACCCTTTGCTCGATTCATTCTTCGAGTCTCCAATGCCGGATCATCCCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTGCTTAGGACACATGACGACTTTGTCTGGCCTGTGGATACAACTTTTGTTGGTCGCTTCATCATTGATGTTGAGTTTCTAGACCTAAAGATATGCCCTCCTAATGGTGGAGAAACTAGTCCTGTATGGCCATCTGATGGAAATTCTCAATCCATTGCATTTCAAAGTAGCATTCTTCGTTGCCTCTCTCGTATGCTTGATGAGGCTATACATGCTGACCTAACTATCATGACAGCCGATGGAAGCACGTTGAGAGCTCATAAGGCAGTTCTCTCAGCAAGTTCCCCAGTGTTCCAGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCCTCCACGATCCATATAGAAGACATGTCACTCGAGTCCTGCACGGCTCTTCTAAGTTACTTGTATGGAGCAATCAAGCAAGAAGATTTCTGGAAACACCGGCTTGCATTGCTTGGAGCTGCTAATAAATATGACATTGGAAGTCTCAAAGACATCTGTGAGGAAAGCCTCCTGGAAGATCTCAGCACAGGAAATGTTCTTGAGATGCTAAATGAGGCTTGGCTTTATCAATTGCACAAGTTAAAGAAAGGATGTTTGGTGTTCTTATTTCAATTTGGTAAGATACATGATATTAAAGATGAAATAAATAATTTTTTCCAGCATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAGGTGCTTTCAATTTCGAACCCGATATAG 984 0.4289 MGDRVETLARLAQWKIDNFGLCSYKKSDPFKVGIWNWYFSIVRNRYLYIHLFPEPSQVLKDNPPFARFILRVSNAGSSRSFHISPVQEKLLRTHDDFVWPVDTTFVGRFIIDVEFLDLKICPPNGGETSPVWPSDGNSQSIAFQSSILRCLSRMLDEAIHADLTIMTADGSTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSYLYGAIKQEDFWKHRLALLGAANKYDIGSLKDICEESLLEDLSTGNVLEMLNEAWLYQLHKLKKGCLVFLFQFGKIHDIKDEINNFFQHADRELMLEMFQEVLSISNPI* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0978 327 SMART BTB_4 161 260 IPR000210 GO:0005515
Gso6g0978 327 CDD BTB_POZ_ZBTB_KLHL-like 160 243 - -
Gso6g0978 327 Pfam BTB/POZ domain 154 258 IPR000210 GO:0005515
Gso6g0978 327 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 1 327 - -
Gso6g0978 327 CDD MATH 14 100 IPR002083 GO:0005515
Gso6g0978 327 ProSiteProfiles BTB domain profile. 161 221 IPR000210 GO:0005515
Gso6g0978 327 Gene3D Potassium Channel Kv1.1; Chain A 135 289 IPR011333 -
Gso6g0978 327 SUPERFAMILY POZ domain 143 258 IPR011333 -
Gso6g0978 327 PANTHER OS08G0495500 PROTEIN-RELATED 1 327 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0978 Gso-Chr6 9451404 9454138 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso6g0978 BTB 2.8e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0978 K10523 - gmx:100787262 668.307