Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0969 ATGGCGCAGACGACCCATCCCATGGACATCGACGACCACACTTACACCGCCAGTCCTGACAAGGGCAAAAGTGTCGTCTTCGCCGGAAACCCTCCCGCCGCCGGCAAGGCCATTCCGTGGGTCGAAAAATACCGCCCTCAGTCCCTCGACGACGTCGCTGCTCACCGTGACATTGTCGATACAATTGATAGGCTAACCACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGCCCTCCTGGCACGGGCAAAACATCAACGATTCTTGCTGTGGCACGCAAACTGTATGGTTCACAGTACCAAAATATGATTTTGGAGCTCAATGCATCCGATGATAGAGGAATTGATGTCGTGCGCCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAATTGGTATTGTTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCGCTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCCGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCCGAAGGGCTTGATGTTGAGGACAGTGGCTTAGCAGCTTTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCCATTGCCAAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACAAGGAAAGGGTTGGCCCTGATTGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTGCGAGTACAGTTGATGAATGATTTGGCAGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTCGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1086 0.4457 MAQTTHPMDIDDHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0969 361 Pfam Replication factor C C-terminal domain 262 348 IPR013748 -
Gso6g0969 361 Gene3D - 200 261 - -
Gso6g0969 361 PANTHER REPLICATION FACTOR C SUBUNIT 5 31 357 - -
Gso6g0969 361 Gene3D - 33 196 IPR027417 -
Gso6g0969 361 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g0969 361 Gene3D - 262 359 - -
Gso6g0969 361 Pfam ATPase family associated with various cellular activities (AAA) 74 194 IPR003959 GO:0005524|GO:0016887
Gso6g0969 361 CDD AAA 58 196 - -
Gso6g0969 361 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 31 357 - -
Gso6g0969 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 255 IPR027417 -
Gso6g0969 361 SUPERFAMILY post-AAA+ oligomerization domain-like 262 352 IPR008921 GO:0003677|GO:0006260
Gso6g0969 361 SMART AAA_5 70 200 IPR003593 -
Gso6g0969 361 CDD HLD_clamp_RFC 197 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0969 Gso-Chr6 9321229 9329019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0969 1 360 Core DNA Replication Machinery Family AT1G77470 78.919 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0969 K10756 - gmx:100782652 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2078 4 51216074 51222894 Gso6g0969 6 9321229 9329019 GST