Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0966 ATGGCCGTCGGAAAGAACAAGAGGATTTCTAAGGCCAAGAAGGGTGGCAAGAAGAAGGCCGCTGATCCTTTTACCAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTGTTCCAGGTCAAGAATGTTGGCAAGACCCTCGTCACTCGTACTCAGGGCACCAAGACTGCTTCGGATGGACTAAAACATCGAGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGTGATGAGGACCATGCATTCAAGAAGATTCGTTTGAGAGCCGAGGATGTTCAAGGGAAGAATGTTTTGACCAACTTCTGGGGAATGAGTTTCACAACTGACAAGTTGAGGTCATTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCATGCTGATGTGAAGACCACTGATAATTATACTTTGAGGATGTTCTGCATTGGGTTTACTAAGAGGCGTAGTAACCAGGTGAAGAGAACCTGTTATGCACAATCGAGCCAAGTTAAACAGATTCGCAGGAAGATGACAGAGATAATGGTCAACCAGACAACATCCTGTGATTTGAAAGAAGTGGTCCGCAAGCTCATCCCTGAGATGATTGGAAAAGAGATTGAGAAGGCAACATCTAGTATCTATCCTCTACAGAATGTGTTCATTCGTAAAGTTAAGATCCTGAAAGCTCCAAAGTTTGATCTTGGGAAACTGATGGAGTGCTGA 696 0.4425 MAVGKNKRISKAKKGGKKKAADPFTKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKTASDGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWQTLIEAHADVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVKQIRRKMTEIMVNQTTSCDLKEVVRKLIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0966 231 Hamap 40S ribosomal protein S1 [RPS3A]. 1 231 IPR027500 GO:0003735|GO:0005840|GO:0006412
Gso6g0966 231 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Gso6g0966 231 MobiDBLite consensus disorder prediction 1 15 - -
Gso6g0966 231 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g0966 231 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 230 - -
Gso6g0966 231 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Gso6g0966 231 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 230 - -
Gso6g0966 231 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0966 Gso-Chr6 9300499 9302088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0966 1 230 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 83.043 4.20e-140 391