Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0941 ATGGTTAAGTCAGAACACAAGATCAAAACCGAACCATCATCAAAGGCAATGCGGTTATCTTCACCCTCATCATCAACATCAGATTGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTTTCTGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAAGCTGCAGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATCTCAATTTCCCTTTAAGCTCTTCACAACAATACATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCGGCCGCCGCAAATAGTTTCATCGACAATGCCACCACTCCCCCTTCCCCACCTCCGGCTTCGACCCCATCATCATCATCATTGGCCTCATCCCCCTCATTGGTTTCTTCTCCCTCGGATCAAATCGATGACGACGCCTTGCTGATATCGTCTTTCCAAGCCTACACTAGTTGTGGTCAAGCAAATCAATCAATGGCTGTGAATGTGATGGAGCCTTGGTACACCTTTGGTGATGGTCTTCAATCCCCCAAGTATGCTGATCAGATGCTAAGTGGTGATTTCTTCCATGTCGATTCTTCCCATCTGCTTGATGATCTATACGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA 696 0.4612 MVKSEHKIKTEPSSKAMRLSSPSSSTSDCKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQQYIPGDAVMSPKSIQRVAAAAANSFIDNATTPPSPPPASTPSSSSLASSPSLVSSPSDQIDDDALLISSFQAYTSCGQANQSMAVNVMEPWYTFGDGLQSPKYADQMLSGDFFHVDSSHLLDDLYEESDIRLWSFC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0941 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 9 231 - -
Gso6g0941 231 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Gso6g0941 231 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Gso6g0941 231 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Gso6g0941 231 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gso6g0941 231 Gene3D AP2/ERF domain 32 92 IPR036955 GO:0003700|GO:0006355
Gso6g0941 231 MobiDBLite consensus disorder prediction 136 152 - -
Gso6g0941 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 231 - -
Gso6g0941 231 MobiDBLite consensus disorder prediction 1 32 - -
Gso6g0941 231 MobiDBLite consensus disorder prediction 122 152 - -
Gso6g0941 231 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Gso6g0941 231 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gso6g0941 231 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0941 Gso-Chr6 9059655 9061241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0941 1 230 AP2-EREBP Transcription Factor Family AT1G21910 43.874 1.70e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g0941 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0941 - - gmx:100819512 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2100 4 51470916 51472418 Gso6g0941 6 9059655 9061241 GST