Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0933 ATGGCCGAGACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCACAAAGGTTTCGGATTCATAACTCCCCAAGATGGAACCGATGATCTCTTCGTGCACTTCACTTCCATCCGATCCGACGGCTACCGTTCTTTGTCCGACGGTCAGTCCGTTGAGTTTCTCCTCGATTACGGCGACGACGGCCGCACCATGGCCGTCGACGTCACCTCAGCCGTTAGATCTCGTCTTCCCGGAGGATTTCGCGGCGGCGGTGGCGGTGGGAGGGGCAGAGGAGGAGGACGCTACGGGGGCGGGGAAGGCCGTGGCAGAGGGTTCGGTCGGAGAGGAGGAGGCCCTGAGTGTTATAACTGTGGAAGAATAGGTCACTTGGCAAGGGATTGTTACCATGGACAGGGTGGTGGTGGTGGTGGTGGTGGTGATGATGGTAGGAATCGGAGACGCGGCGGTGGTGGTGGAGGAGGAGGAGGGTGTTTTAACTGTGGGGAGGAAGGGCATTTTGCGAGGGAATGTCCGAATGTTGGAAAAGGAAATGAGTGA 543 0.582 MAETRRSTGTVKWFNAHKGFGFITPQDGTDDLFVHFTSIRSDGYRSLSDGQSVEFLLDYGDDGRTMAVDVTSAVRSRLPGGFRGGGGGGRGRGGGRYGGGEGRGRGFGRRGGGPECYNCGRIGHLARDCYHGQGGGGGGGGDDGRNRRRGGGGGGGGGCFNCGEEGHFARECPNVGKGNE* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0933 180 SUPERFAMILY Retrovirus zinc finger-like domains 106 175 IPR036875 GO:0003676|GO:0008270
Gso6g0933 180 ProSiteProfiles Zinc finger CCHC-type profile. 159 174 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 175 - -
Gso6g0933 180 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Gso6g0933 180 ProSiteProfiles Zinc finger CCHC-type profile. 116 129 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Gso6g0933 180 Gene3D - 108 148 - -
Gso6g0933 180 Gene3D - 149 180 - -
Gso6g0933 180 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Gso6g0933 180 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Gso6g0933 180 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Gso6g0933 180 SMART csp_8 8 73 IPR011129 GO:0003676
Gso6g0933 180 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Gso6g0933 180 Pfam Zinc knuckle 158 174 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 Pfam Zinc knuckle 115 129 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Gso6g0933 180 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 SMART c2hcfinal6 115 131 IPR001878 GO:0003676|GO:0008270
Gso6g0933 180 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Gso6g0933 180 Gene3D - 1 71 IPR012340 -
Gso6g0933 180 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0933 Gso-Chr6 8981593 8982527 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso6g0933 CSD 4.5e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0933 - - gmx:100815773 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2107 4 51538435 51539303 Gso6g0933 6 8981593 8982527 GST