Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0920 ATGGATCGCAAGAACCCGAGGCGAAAGCCCAAGCTCGAGCGCCGCAACGCTCTTAAGTACTCCTCCTCCGAATACGACGCCGGATCGTCCCCCTCCGACGACACGCTCTACACGCGCTCCATGGAGTTCTACGACCGCACGAGTTTCCGAATCGAGGGCGTCGAAGGCGAGTTCGATCGAATTTGCCGCAGTTTGGGCCTCTCCGGCCCAGAGGACTTCGCTATTCCCGCTGCGGCGTGGGAGGCCATAAAGTTTCGCTACTCTTCGGATATTCTCCCGAGACTGAAGCTCGATAACCTCGATATTCCCGAGGAGGAGGAAGGTGAAGAAGAATTGAAGGTAAACGAGGATATAATAGTTAATTCAGTAGAGGAAGGTAAATTGAGTGAAAAACACGGAGATAGTAGTAGTGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGAGATAGATGAATCGAGCACTGGTATTAAGGGGACTCGGCCACCGATGCTGAAGCCGCCGCCGGGGGCGAGGGTTCAGGTGGTGGATGATAGCACGTGTTCCACGTGGGACCTTTTGAGGGACTTGGCTCCTCAAGGGGAAGAAGGGTTACCGTTGAACCGTTCCGAGAATGAGAGTGAAGTAGCGAGAGAAGTAGAGAGAGGAGCGGTGGAGAAGGAAGAAGGGGAAGTTGGTACTAGAGAGAGTCCGAAGAGGGAAGAGGAAGAGAATGTGGCTGGGCTTTCGGAGTCGTGTTCGTTTTCTACTTCCAACGAAGATGATTCTTCGAGTAGTACTACGGACCCTACGTCTAATAATATTTCTCCGCAAGGGAGAATCAAACGGATTATTACCGCCGAAAGCTGGCAGAAGGGTGAGTTTCTCGGGGGTGGCTCGTTTGGCTCTGTTTATGAAGGGATTTCCGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCACTGCTTGATCAAGGGACTCAGGGAAAGCAGAGTGTATATCAACTGGAGCAGGAAATAGCACTTTTGAGTCAATTTGAGCATGAAAATATTGTTCAATACTATGGCACAGAAATGGATCAATCAAAGTTGTATATCTTTCTTGAGCTTGTAACGAAAGGTTCCCTTAGAAGCCTCTATCAGAAGTATACTCTTCGAGATTCCCAAGTATCTTCCTATACGAGACAGATTCTGCATGGTTTGAAGTATCTTCATGACCGAAATGTGGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTTAAATCAATGAAGGGGACAGCATTCTGGATGGCGCCTGAGGTTGTAAAAGGAAAGAACAAGGGTTATGGCCTTCCAGCTGATATTTGGAGTCTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTGATTTGGAATCTATGCAGGCATTATATAGAATTGGAAAAGGTGAGCGACCTCGTATTCCTGATTCTCTTTCGAGAGATGCACAAGATTTTATCCTGCAGTGCCTTCAAGTTAGTCCAAATGATCGTGCCACTGCTGCTCAACTTTTAAACCATTCATTTGTCCAAAGGCCACTTTCTCAGTCCTCTGGTTCTTCATTTCCTCATATTCACGGCCGGAAGGGTTAA 1668 0.473 MDRKNPRRKPKLERRNALKYSSSEYDAGSSPSDDTLYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFAIPAAAWEAIKFRYSSDILPRLKLDNLDIPEEEEGEEELKVNEDIIVNSVEEGKLSEKHGDSSSVRVRVRVRVREIDESSTGIKGTRPPMLKPPPGARVQVVDDSTCSTWDLLRDLAPQGEEGLPLNRSENESEVAREVERGAVEKEEGEVGTRESPKREEEENVAGLSESCSFSTSNEDDSSSSTTDPTSNNISPQGRIKRIITAESWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDQSKLYIFLELVTKGSLRSLYQKYTLRDSQVSSYTRQILHGLKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKLNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSLGCTVLEMLTGQLPYCDLESMQALYRIGKGERPRIPDSLSRDAQDFILQCLQVSPNDRATAAQLLNHSFVQRPLSQSSGSSFPHIHGRKG* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0920 555 Pfam Protein kinase domain 283 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0920 555 SUPERFAMILY Protein kinase-like (PK-like) 279 538 IPR011009 -
Gso6g0920 555 ProSiteProfiles Protein kinase domain profile. 282 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0920 555 MobiDBLite consensus disorder prediction 191 271 - -
Gso6g0920 555 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 44 548 - -
Gso6g0920 555 SMART serkin_6 282 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0920 555 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Gso6g0920 555 Gene3D Transferase(Phosphotransferase) domain 1 278 550 - -
Gso6g0920 555 MobiDBLite consensus disorder prediction 241 271 - -
Gso6g0920 555 MobiDBLite consensus disorder prediction 200 239 - -
Gso6g0920 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Gso6g0920 555 MobiDBLite consensus disorder prediction 1 36 - -
Gso6g0920 555 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 44 548 - -
Gso6g0920 555 MobiDBLite consensus disorder prediction 153 174 - -
Gso6g0920 555 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0920 Gso-Chr6 8818367 8825957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0920 11 539 MAP Kinase Kinase Kinase AT4G08500 51.115 1.56e-165 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso6g0920 Pkinase 2.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0920 K13414 - gmx:100778553 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1395 14 43285423 43301831 Gso6g0920 6 8818367 8825957 PCT
Gso13g0588 13 19457113 19466583 Gso6g0920 6 8818367 8825957 PCT
Gso6g0920 6 8818367 8825957 Gso14g1395 14 43285423 43301831 PCT
Gso6g0920 6 8818367 8825957 Gso13g0588 13 19457113 19466583 PCT