Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0916 ATGCTCTGCTTCTTGTGTACTTTGTTGTTGCCGGTGATGACCGGGGGCCGATGTCACCCGTGGGAGGGTATGGCGGAGGGAGGTGATGCCGCCGCCGTGGAGAGACGGTGCGAGGTTAATTTTCCGGCGGAAATCCCTCGCGACTCTGCTGTTTGCAAAATTGACTACTTGTCCCAGGCTAGGAAATCGCTTGCGGAGCGTTCGCCTTTCGATGTTGCTGAAGAAACGTCGACTTCCGCGGCTGCGGTTACTCTGCCCAGTGGCTTGGCTGTTTTGCTGAACCGGCAGGGTGATAACAGGAGGCGTCCCAAGAAGTCTCATTCTGGCGCAAATAAGAGGAAATCGTCGAATAGGGCGAACCAGAAGAAGCCGGAGGACTCTAACATTTGGATTGAGACGGAGCAGTACTTTAGGGACTTGACCGTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCATTTCTAGTTTAATGTCTCAGAACTGTTTCACCATCCCGTGTCTGGGAAATGCTCCTAGGTACAATGCAGTTACTAGTAATAGGGGGAATGGAATGGAGCCTGTTCCAAGATTCAATGAAGTAGTTTGTAGTGAGGATGGAAAAAAGGGTGAGGATGAAAACAAGGGTGGTGAAGTGGTGGAAAATGAGGATGAATTGTTGGTAATTGAGGCAATTGATGATGTTACTGTTGAACAAGTTCCTCCTCAGGATGACAAGAGTGAGGACATTTCTGATTCTTCAGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCTTTGACTTCTGAGCGCCCTACCAAGAAAAGGAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTTCAATGACTTGTCCTTGTGATGAGGGCCAACTGTTTTGCCATTATTGTGGTAGGGGAGACACCAGCAGAGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGTAGTTCACCGAAAGTGCTATGGTGTGTATGATGATGATGTAGATGGGACTTGGATGTGTTCCTGGTGCAAGCAAAAGGTTGATGTTGATGAATCGTCGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCATTAAAGCCAGTTAATAGCAGCGCAGAAGGTGCGGGGTTGGTCCCATTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATCTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGAAAGAAACTAATGTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGATGTAGCCATGGAAGCTGCAGAGCTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAACAATAATGTTGAGTTGCGGGCTTTTTGCTTGAAGCACTCAGATCTACCAGAAAATAGAAGCATCTTGCCATTGAAAGGCTCTATCGCAGATGGAGGACTATCTGATTGCAGGTTAAGTGCTCATGACGACATGTTGGGATGTGGTGCTGTGCCCCAACAAGATGTTGGAGTGGTAGGGAGAGCCAATGAGAATGTTGATGCATCTGACTCTCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGACGTAGCATTGGAAATTGGCATTTCACCAGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAATTCAAACCAGCCAATGCATCCAAAAACGACAGTGAAGCCATAGATGGTTCTGACACTTTACCAATATCAGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCGCCCAGGAGAAGAACCACCAGTAACATTAGGATTTTGAAGGATAACAAAGTGATATGTTCATCTGAGGGGGTTATTGGTGAGAATGGGATGCCGGTGGACATGTGCAGAGTAGGTCAGTCTGACTGTGACAATCCAACCAATTATAATGAAGCATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGCTTCTGGATGTGTTTCAGCAGGCAACTCTACTGCTTGTTTGCAAAATGCTTCTGTGCTTTCTGATCACTGTCTTGTTCATTCTGCTTCAGAACCACCTGATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTCGTGATGGGGTGCCCTTGGAGGACATTATATCAGGTTCAAGTGATGAGGGAAATTCTTCTTTGGTTGAATCCTTTCGGGCTAGTGCCTGCTCAAGCAGCCAAAATCAGAATTTAACTCGCGTTGATATTTCAAAGCCTGATGAAGTAAATATGGAGCAGTTGGTTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTACAGTGTTGCCAAGAGTTTGCCACACGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTGCGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTACTAGGGCTCTCCGGAAAGACACCTTAGATGAATCAATGCAACAAGAGAATTTGTTAAAATTGGATACTCTAAATGGAAGAACCGGTGCTTGTTCTCAGCCGATGTCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCGTCAGAGAAATATTCGGATTTTTGCATGCCAACCTCCGATTTGTCTAAGGAGCATTGTAAATCATGCGATATTTGCAGACGATCAGAGTTTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTTCGGTGCACTTGGATTGCTACCGTAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCCGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTAATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAATAAATGCTGTTGAAGGAATGGAAACTTTGCCAAAAGGAGTTGACATTTGTTGCATCTGCCACCACAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGGACTACTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTGAAACGTGAAAAAATAAAGAGGGAATTGGTACTATGTTCACATGACATACTGGCCTTTAAAAGAGATCATGTTGCTAGGTCCGTGCTGGTTCGAAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACTTCAAAGATCAGATGATGTTACTGTGGACAGTTCAGTTTCTGCTAAGCGCCGTGTCAGAGTCGCCATATCTATGGACACAGACTCAAAATTGGACGATGACTGCTCAACCTCTCAAAGTCGATTCAACCACAGGATTCCAGATAGATTGCAATTTTCTGGCAAGAAGGTTCCTCATAGAACTGCTGCATCACGTAATATTTCAGATGAAGGTGGATGGATATCCAAATCTAGAAATCATTCCGACAGATTCGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCAAATGAGAAGCACTCTGACGAGGACGTATATGCTAGTGAACCAGTGGAGCATGACAGGTAG 4215 0.4363 MLCFLCTLLLPVMTGGRCHPWEGMAEGGDAAAVERRCEVNFPAEIPRDSAVCKIDYLSQARKSLAERSPFDVAEETSTSAAAVTLPSGLAVLLNRQGDNRRRPKKSHSGANKRKSSNRANQKKPEDSNIWIETEQYFRDLTVADIDTLFEASRISSLMSQNCFTIPCLGNAPRYNAVTSNRGNGMEPVPRFNEVVCSEDGKKGEDENKGGEVVENEDELLVIEAIDDVTVEQVPPQDDKSEDISDSSVSLEWFLGCRNKVSLTSERPTKKRRLLGVEAGLEKVSMTCPCDEGQLFCHYCGRGDTSRDSNRLIVCASCKVVVHRKCYGVYDDDVDGTWMCSWCKQKVDVDESSNPCVLCPKKGGALKPVNSSAEGAGLVPFVHLFCSLWMPEVYIDDLKKMEPVMNVGEIKETRKKLMCSVCKAKCGACVRCSHGSCRASFHPLCAREARHRMEVWAKYGNNNVELRAFCLKHSDLPENRSILPLKGSIADGGLSDCRLSAHDDMLGCGAVPQQDVGVVGRANENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVQHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSEAIDGSDTLPISDSGLLDPVAVKSVPPRRRTTSNIRILKDNKVICSSEGVIGENGMPVDMCRVGQSDCDNPTNYNEASIPNATEMNLTKSEDIFHEVQGNASGCVSAGNSTACLQNASVLSDHCLVHSASEPPDFGFIKKDAISSYIHPYINKKLLQIRDGVPLEDIISGSSDEGNSSLVESFRASACSSSQNQNLTRVDISKPDEVNMEQLVRARKMGLLEFSPQDELEGELVYFQHRLLQNAVAKKRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDTLDESMQQENLLKLDTLNGRTGACSQPMSRAKETLSRVAVTRTSSEKYSDFCMPTSDLSKEHCKSCDICRRSEFILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPVAECALCGGTTGAFRKSSNGQWVHAFCAEWVFESTFKRGQINAVEGMETLPKGVDICCICHHKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTTGGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKRRVRVAISMDTDSKLDDDCSTSQSRFNHRIPDRLQFSGKKVPHRTAASRNISDEGGWISKSRNHSDRFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNEKHSDEDVYASEPVEHDR* 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0916 1404 SMART PHD_3 295 343 IPR001965 -
Gso6g0916 1404 SMART PHD_3 998 1043 IPR001965 -
Gso6g0916 1404 SMART PHD_3 417 473 IPR001965 -
Gso6g0916 1404 SMART PHD_3 1117 1171 IPR001965 -
Gso6g0916 1404 CDD ePHD 1065 1170 - -
Gso6g0916 1404 ProSiteProfiles Extended PHD (ePHD) domain profile. 1062 1171 IPR034732 -
Gso6g0916 1404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 348 IPR013083 -
Gso6g0916 1404 MobiDBLite consensus disorder prediction 1325 1349 - -
Gso6g0916 1404 Pfam PHD-finger 309 343 - -
Gso6g0916 1404 Pfam PHD-finger 1010 1043 - -
Gso6g0916 1404 ProSiteProfiles Extended PHD (ePHD) domain profile. 352 473 IPR034732 -
Gso6g0916 1404 SUPERFAMILY FYVE/PHD zinc finger 286 345 IPR011011 -
Gso6g0916 1404 MobiDBLite consensus disorder prediction 94 127 - -
Gso6g0916 1404 Pfam PHD-zinc-finger like domain 354 472 - -
Gso6g0916 1404 Pfam PHD-zinc-finger like domain 1064 1170 - -
Gso6g0916 1404 ProSiteProfiles Zinc finger PHD-type profile. 996 1045 IPR019787 -
Gso6g0916 1404 SUPERFAMILY FYVE/PHD zinc finger 991 1043 IPR011011 -
Gso6g0916 1404 PANTHER PHD FINGER PROTEINS 796 1394 - -
Gso6g0916 1404 PANTHER PHD FINGER PROTEINS 107 485 - -
Gso6g0916 1404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 975 1052 IPR013083 -
Gso6g0916 1404 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 107 485 - -
Gso6g0916 1404 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 796 1394 - -
Gso6g0916 1404 MobiDBLite consensus disorder prediction 1249 1271 - -
Gso6g0916 1404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1060 1172 IPR013083 -
Gso6g0916 1404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 475 IPR013083 -
Gso6g0916 1404 Coils Coil 893 913 - -
Gso6g0916 1404 Coils Coil 1400 1404 - -
Gso6g0916 1404 ProSiteProfiles Zinc finger PHD-type profile. 293 345 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0916 Gso-Chr6 8782417 8793388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0916 290 479 C2H2 Transcription Factor Family AT3G14740 29.167 1.27e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g0916 zf-HC5HC2H_2 1.3e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0916 - - gmx:100777481 2741.07