Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0912 ATGGAGGTAGTTAATTGTTTGCATTCACCCACGTCTGTGCCTGTTTGTTATTCTCTCTCTCTCTCAGATCACCACTTTCACACACAACACAATAATAAAAACACCACACTCATTCGATTCTGTTGCTGCTATCATGTATGTTTGAAAACCCTAACCAAATCTCTATTGTGTAGCGAATTCTATTTCCGTGTGAGTGAACAATGCCTCGCCAACCGCCGCCGTCACCGCCGTCGCAGCCGGGCGTTCTGGACCCCGAAATCTGGCGAGTCTGCTCTGGAACCACTGTGGAGATCCCCACGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGACACTTCGACGTGTATCTTTCCGCCGCTGAACTTCCCGGCGGACCCGCCGGTGCAGAACCTCCTCGTCACCGACGTGCACGGCTTCGTCTGGGAGTTCCGCCACATCTACCGCGGGACGCCGCGGCGGCACCTGCTGACCACCGGCTGGAGCACGTTCGTGAACAACAAGAAGCTCGTCGCCGGCGACGCCGTGGTTTTCATGAAGAACTCCAGGGGAGGGTTGCTCGTCGGAATTCGCCGCACCACGCGCTTCTCTCCTGGGAAGGGTGGCGATGTCGGAACGAGGATCAAGGTGGATGAGGAGGAGGAAGAGGAAGAGGAGGTGAGAGAGGTTTTCTCGAGGGACGGGAGGGGGAAGCTGTCGGCGAAGGTGGTTGCGGAGGCGGCGGAACTGGCGGCGAGGAGCATGCCGTTCGAGGTTGTTTATTATCCGAAAGGTGGGTGGTCGGAGTTTGTGGTGAAGACTGAGGCTGTGAATGAAGCAATGAGTGTTGAGTGGAGCCCCGGAATGAAAGTGAAGATCGCTACGGAGACAGATGATTCGTCCAGGGTGTCGTGGTGTCAGGGTACGGTTGGCAACTCAGGAAAATGTGTGTCTATTTCATTTCAACTGTTTGGTGCAGTCATTCACACAGAACGGCCTGTTGAAAATGGTTTGCAATACTGGTTGCACTTGCGCAGGAGATGA 1020 0.548 MEVVNCLHSPTSVPVCYSLSLSDHHFHTQHNNKNTTLIRFCCCYHVCLKTLTKSLLCSEFYFRVSEQCLANRRRHRRRSRAFWTPKSGESALEPLWRSPRCILGFTTSRRDTSTCIFPPLNFPADPPVQNLLVTDVHGFVWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDAVVFMKNSRGGLLVGIRRTTRFSPGKGGDVGTRIKVDEEEEEEEEVREVFSRDGRGKLSAKVVAEAAELAARSMPFEVVYYPKGGWSEFVVKTEAVNEAMSVEWSPGMKVKIATETDDSSRVSWCQGTVGNSGKCVSISFQLFGAVIHTERPVENGLQYWLHLRRR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0912 339 PANTHER AUXIN RESPONSE FACTOR 304 331 - -
Gso6g0912 339 PANTHER AUXIN RESPONSE FACTOR 112 304 - -
Gso6g0912 339 CDD B3_DNA 121 191 IPR003340 GO:0003677
Gso6g0912 339 SUPERFAMILY DNA-binding pseudobarrel domain 112 203 IPR015300 -
Gso6g0912 339 Pfam Auxin response factor 239 307 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso6g0912 339 SMART B3_2 102 193 IPR003340 GO:0003677
Gso6g0912 339 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 304 331 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso6g0912 339 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 112 304 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso6g0912 339 Gene3D - 102 193 IPR015300 -
Gso6g0912 339 ProSiteProfiles B3 DNA-binding domain profile. 131 193 IPR003340 GO:0003677
Gso6g0912 339 Pfam B3 DNA binding domain 130 192 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0912 Gso-Chr6 8733581 8737803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0912 104 305 B3 DNA Binding Superfamily AT1G77850 50.718 6.21e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso6g0912 Auxin_resp 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0912 - - gsj:114414296 676.011