Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0899 ATGTCGTCGTCGTCGAATTCGCCATGTGCGGCGTGCAAGATTCAACGTCGGAAGTGCACGCAGGAGTGTGTTTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGCGGTTCGCTTACGTGCATAAGGTGTTCGGGGCAAGTAACGTGGCCAAGCTTCTCAACGAGCTTAACGCGGCGCAACGCGAAGACGCGGTTAAGTCATTAGCATACGAGGCAGAAGCGCGTTTGCGGGACCCAGTGTATGGCTGCGTGGGCCTCATCTCCATACTCCAGCACAGGCTCAAACAGCTTCAGAATGAACTCCACCACGCCAAGAAAGAACTTGCTTCTCACATCGGATCCCACACCATGCTGCCTCCAGCACCTTCCCTACTACCGCCGGAGCAGCAGCCACGCACTTTTTCGCTTTTTCCTTTCAAACCCGCGTCCACTCATCAGCATGATCTTTTCGGCTTCCACGACGACGGTGGCGCATCTTCGGCTTCCCACGCCGGCGGATTCAACAACCACCTCGCCGCCGTATTCTCGCCTTCCCCTGCCGTTGATCACGCCTTTTCTCACGCGCCGATGCAGTCTCTTACTCTTCCGCATCACCAACACCTAATGCGCTCCCCGATGCAACCCAAGCCTCAAACCGACCCAGCTTAG 648 0.571 MSSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQNELHHAKKELASHIGSHTMLPPAPSLLPPEQQPRTFSLFPFKPASTHQHDLFGFHDDGGASSASHAGGFNNHLAAVFSPSPAVDHAFSHAPMQSLTLPHHQHLMRSPMQPKPQTDPA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0899 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gso6g0899 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 3 142 - -
Gso6g0899 215 Coils Coil 87 114 - -
Gso6g0899 215 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Gso6g0899 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0899 Gso-Chr6 8622425 8624291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0899 3 130 AS2 family AT5G66870 74.809 1.74e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso6g0899 LOB 2.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0899 - - gmx:100819170 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0925 4 11139052 11140993 Gso6g0899 6 8622425 8624291 GST