Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0896 ATGAGTTCAGCTCCCAGTATGAGAGTCAGCGAGCAAGAGCACTTTCATCTTGAGGATACTAGTGACATAGAGAGGTCTATTTGGGTGCTGAATCCTCCCAATCCACCACCTCTTAGGAACAAGCTATTTAGTCCACTGAAGAAAACTGTGTCCTTTTTTTCATCCAAGAAGAAAACTTGCCTTGGACATGCTGTTTCATTCTTGGAGAGTCTATTCCCAATCCTTACATGGTTCACAAATTACAAGGCCTCCAAATTCAAAGAAGATTTGCTAGCCGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCAAAACTTGATCCTCAATATGGTCTATACACCAGTGTTGTTCCTCCACTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATTGCAATTGGGCCTGTAGCTGTAGTTTCATTGCTGCTATCCTCTTTGGTCCCCAAAGTGGTGGATCCTGCTGTTGATCCTGATGCCTACAGGAATGTCGTCTTTACTGTTACCTTATTTGCTGGAATCTTTCAAGCTGCATTTGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCATGATTGGTCTTCAGCAGCTCAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCTGTATTGGAATCTGTTTATAAGTCGCTCCACCAACAAATCACATCTGGAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCTTGATTTTCCTTTTAATTGCCCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCTGCTATTGCTCCTCTTCTATCAGTTATATTATCAACTTTAATTGTGTATTTATCAAAAGCTGATAAGAATGGGGTTAACATAATAAAGCATGTCAAAGGAGGCTTGAATCCAAGTTCAGTTCAACAGTTACAATTCCATGGTCCACAAGTTGGTCAAGCAGCAAAAATTGGATTGATCTCTGCCGTTATTGCTCTTACTGAAGCAATAGCAGTTGGTCGATCTTTTGCTTCTATTAAAGGATACCATCTTGATGGCAACAAGGAAATGCTAGCAATGGGATGTATGAACATTGCTGGATCGCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCTGGATGTCAAACATCAGTGTCAAATATTGTGATGGCAGTTACTGTGTTTTTGTGTCTTGAATTGTTTACAAGGCTTCTATACTACACTCCAGTGGCCATACTTGCTTCTATCATCCTCTCTGCACTTCCTGGATTAATTGACATAAGTGAAGCTTGCTATATTTGGAAGGTTGACAAATTTGACTTTCTAGCCTGCATTGGTGCTTTCTTGGGGGTCTTGTTTGAATCGGTGGAAATTGGTCTTCTTGTTGCAGTGTCAATCTCATTTGCAAAGATACTAATACAATCAATTCGACCTGGGATAGAAGTTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTAGTCAATATCCCATGGCCACAAGCACTCCAGGCATGTTGGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCAAATTTTGTTAGAGAAAGAATACTAAAATGGGTCGCGGAAGAAGAAAACGAGCTTGCTAAGGGAAGAGTCCAAGCAGTAATCTTAGACATGAGCAACCTGATGAATGTTGATACTTCTGGGATTCTAATACTGGAGGAACTGCACAAGAGGTTGCTCTCGCGTGGCGTACAATTGGCTATGGTGAACCCAAGGTGGCTAGTGATTCACAAGCTCAAAGTGGCACATTTTGTGGATAAAATCGGAAGGCAGTGGGTTTTCCTTACTGTTGCTGAAGCCGTAGATGCATGTCTATCTTCTAAACTCCCTGACCCATGA 1962 0.4174 MSSAPSMRVSEQEHFHLEDTSDIERSIWVLNPPNPPPLRNKLFSPLKKTVSFFSSKKKTCLGHAVSFLESLFPILTWFTNYKASKFKEDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPAVDPDAYRNVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGITHFTNKTDVISVLESVYKSLHQQITSGEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLLSVILSTLIVYLSKADKNGVNIIKHVKGGLNPSSVQQLQFHGPQVGQAAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVFLCLELFTRLLYYTPVAILASIILSALPGLIDISEACYIWKVDKFDFLACIGAFLGVLFESVEIGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGMLVIRISSGSLCFANANFVRERILKWVAEEENELAKGRVQAVILDMSNLMNVDTSGILILEELHKRLLSRGVQLAMVNPRWLVIHKLKVAHFVDKIGRQWVFLTVAEAVDACLSSKLPDP* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0896 653 CDD STAS_SulP_like_sulfate_transporter 525 638 - -
Gso6g0896 653 SUPERFAMILY SpoIIaa-like 530 645 IPR036513 -
Gso6g0896 653 ProSiteProfiles STAS domain profile. 541 645 IPR002645 -
Gso6g0896 653 TIGRFAM sulP: sulfate permease 73 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gso6g0896 653 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Gso6g0896 653 Gene3D STAS domain 504 648 IPR036513 -
Gso6g0896 653 Pfam STAS domain 525 641 IPR002645 -
Gso6g0896 653 Pfam Sulfate permease family 86 472 IPR011547 GO:0016021
Gso6g0896 653 PANTHER SULFATE TRANSPORTER 14 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gso6g0896 653 PANTHER SLC26A/SULP TRANSPORTER-RELATED 14 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0896 Gso-Chr6 8567230 8571327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0896 24 650 Inorganic Solute Cotransporters AT5G10180 64.207 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0896 K17469 - gmx:100805269 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1425 14 44231550 44237470 Gso6g0896 6 8567230 8571327 PCT
Gso13g0605 13 19848981 19861179 Gso6g0896 6 8567230 8571327 PCT
Gso6g0896 6 8567230 8571327 Gso14g1425 14 44231550 44237470 PCT
Gso6g0896 6 8567230 8571327 Gso13g0605 13 19848981 19861179 PCT