Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0885 ATGGCAGCTTTGATGGATTTTTACAGCAGCAGCCCAGAGTTTCAACATCACTCAGATCCATTCAGGGGAGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCTCCCAACTATTTCCCTTCCTCCCCCTCCCTCCCTAATCTTTACTCAAACGGGTTATCCAGCAACACCCAAAGCTTAATTGGCTTCGGGCAAGCGCAACCCACATCTCTTGTGGGCCTGAACCACCTAACCCCATCTCAGATCTCTCAGATCCAAGCCCAAATCCAGATCCAGGCCCAGCAGCATCAGAATCGCAGCAACACCCTGAGCTTCCTTGGGCCGAAGCCCATCCCCATGAAGCACGCGGGCATGCCTCCGAAGCCCACGAAGCTTTACAGAGGGGTGAGACAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTTCCCAAGAACCGGACCAGGCTGTGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCATACGACAAGGCCGCGTACAAGCTCCGAGGTGACTTCGCCAGGCTCAACTTCCCAAACCTGCGACACCAGGGTTCCTCCGTCGGTGGTGATTTCGGGGAGTACAAGCCTCTTCATTCCGCTGTTGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCCGAGGAAGTCGCGTTCCAAACTCGCGGAGAAGGTTGTTTCCGACAAGGAGAACAACAACTCTTGTAAGGTGGAAGCTGCGTCCTGGTCGTCGGAAGGTTCTTCGCCGCTTTCGGATCTGACGTTTGCTGACGTGAGCGAGGCTCAGTGGGAAGGTGATTCGGATAATTATAATCTCCAGAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTGTGA 909 0.5424 MAALMDFYSSSPEFQHHSDPFRGELMEVLEPFMKSPSPNYFPSSPSLPNLYSNGLSSNTQSLIGFGQAQPTSLVGLNHLTPSQISQIQAQIQIQAQQHQNRSNTLSFLGPKPIPMKHAGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEKPPRKSRSKLAEKVVSDKENNNSCKVEAASWSSEGSSPLSDLTFADVSEAQWEGDSDNYNLQKYPSYEIDWDSL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0885 302 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 Gene3D AP2/ERF domain 127 185 IPR036955 GO:0003700|GO:0006355
Gso6g0885 302 Pfam AP2 domain 128 176 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Gso6g0885 302 MobiDBLite consensus disorder prediction 223 267 - -
Gso6g0885 302 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 301 - -
Gso6g0885 302 MobiDBLite consensus disorder prediction 249 267 - -
Gso6g0885 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 301 - -
Gso6g0885 302 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
Gso6g0885 302 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0885 Gso-Chr6 8442519 8444202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0885 1 302 AP2-EREBP Transcription Factor Family AT1G78080 52.149 2.01e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g0885 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0885 K09286 - gmx:100800478 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0897 4 9744456 9746204 Gso6g0885 6 8442519 8444202 GST
Gso14g1438 14 44783594 44785396 Gso6g0885 6 8442519 8444202 PCT
Gso13g0617 13 20089184 20091007 Gso6g0885 6 8442519 8444202 PCT
Gso6g0885 6 8442519 8444202 Gso14g1438 14 44783594 44785396 PCT
Gso6g0885 6 8442519 8444202 Gso13g0617 13 20089184 20091007 PCT