Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso6g0885 | ATGGCAGCTTTGATGGATTTTTACAGCAGCAGCCCAGAGTTTCAACATCACTCAGATCCATTCAGGGGAGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCTCCCAACTATTTCCCTTCCTCCCCCTCCCTCCCTAATCTTTACTCAAACGGGTTATCCAGCAACACCCAAAGCTTAATTGGCTTCGGGCAAGCGCAACCCACATCTCTTGTGGGCCTGAACCACCTAACCCCATCTCAGATCTCTCAGATCCAAGCCCAAATCCAGATCCAGGCCCAGCAGCATCAGAATCGCAGCAACACCCTGAGCTTCCTTGGGCCGAAGCCCATCCCCATGAAGCACGCGGGCATGCCTCCGAAGCCCACGAAGCTTTACAGAGGGGTGAGACAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTTCCCAAGAACCGGACCAGGCTGTGGCTGGGAACCTTCGACACCGCCGAGGAAGCCGCTCTGGCATACGACAAGGCCGCGTACAAGCTCCGAGGTGACTTCGCCAGGCTCAACTTCCCAAACCTGCGACACCAGGGTTCCTCCGTCGGTGGTGATTTCGGGGAGTACAAGCCTCTTCATTCCGCTGTTGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGCTGCAGAAACAGGGGAAGACCGAGAAGCCTCCGAGGAAGTCGCGTTCCAAACTCGCGGAGAAGGTTGTTTCCGACAAGGAGAACAACAACTCTTGTAAGGTGGAAGCTGCGTCCTGGTCGTCGGAAGGTTCTTCGCCGCTTTCGGATCTGACGTTTGCTGACGTGAGCGAGGCTCAGTGGGAAGGTGATTCGGATAATTATAATCTCCAGAAGTACCCCTCTTATGAGATCGATTGGGATTCTCTGTGA | 909 | 0.5424 | MAALMDFYSSSPEFQHHSDPFRGELMEVLEPFMKSPSPNYFPSSPSLPNLYSNGLSSNTQSLIGFGQAQPTSLVGLNHLTPSQISQIQAQIQIQAQQHQNRSNTLSFLGPKPIPMKHAGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSAVDAKLQAICEGLAELQKQGKTEKPPRKSRSKLAEKVVSDKENNNSCKVEAASWSSEGSSPLSDLTFADVSEAQWEGDSDNYNLQKYPSYEIDWDSL* | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso6g0885 | 302 | ProSiteProfiles | AP2/ERF domain profile. | 127 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | Gene3D | AP2/ERF domain | 127 | 185 | IPR036955 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | Pfam | AP2 domain | 128 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | SUPERFAMILY | DNA-binding domain | 127 | 185 | IPR016177 | GO:0003677 | |
Gso6g0885 | 302 | MobiDBLite | consensus disorder prediction | 223 | 267 | - | - | |
Gso6g0885 | 302 | PRINTS | Ethylene responsive element binding protein signature | 128 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | PRINTS | Ethylene responsive element binding protein signature | 150 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 1 | 301 | - | - | |
Gso6g0885 | 302 | MobiDBLite | consensus disorder prediction | 249 | 267 | - | - | |
Gso6g0885 | 302 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 1 | 301 | - | - | |
Gso6g0885 | 302 | SMART | rav1_2 | 127 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | CDD | AP2 | 126 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0885 | 302 | MobiDBLite | consensus disorder prediction | 223 | 248 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso6g0885 | Gso-Chr6 | 8442519 | 8444202 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso6g0885 | 1 | 302 | AP2-EREBP Transcription Factor Family | AT1G78080 | 52.149 | 2.01e-102 | 301 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Gso6g0885 | AP2 | 6.4e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso6g0885 | K09286 | - | gmx:100800478 | 554.673 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso4g0897 | 4 | 9744456 | 9746204 | Gso6g0885 | 6 | 8442519 | 8444202 | GST | |
Gso14g1438 | 14 | 44783594 | 44785396 | Gso6g0885 | 6 | 8442519 | 8444202 | PCT | |
Gso13g0617 | 13 | 20089184 | 20091007 | Gso6g0885 | 6 | 8442519 | 8444202 | PCT | |
Gso6g0885 | 6 | 8442519 | 8444202 | Gso14g1438 | 14 | 44783594 | 44785396 | PCT | |
Gso6g0885 | 6 | 8442519 | 8444202 | Gso13g0617 | 13 | 20089184 | 20091007 | PCT |