Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0883 ATGATGACGAACCAAAATGTGGTGACTCATGAGGTTATTAACACGCTGATTGCCATGGCAGCTTCCATTTCAAACTCAACCGTGTTGCCAAGTGCAACAGTACCAGAATCCATGGCTGTGCTTGGTGGGTTTTGGGGGCTGCCCCATAATAAAAATCTTGTGAAAAGATTGGAAGGAGCCAAAGTTAGTGCATGGATTGATTCAATGAGAGCTTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTCTTTATCACCCTTCAGCTCTGAACACCTTTGAACAGATAGTATATAGTGCCAAAGGAAAGCAAATTGTAGTTTTTCTTGACTACGATGGAACTCTCTCTCCAATTGTTGCAGATCCGAATAAGGCTTTCATGACTAGAAAGATGAGAGCAACACTAAAGGGTATTGCAAGACATTTTCCCACAGCAATCGTGACTGGAAGGTGCAGAGACAAGGTATATAACTTTGTAAAATTGGCAGAACTTTACTATGCGGGAAGCCATGGCATGGACATCACTGGTCCAACAAAAAGTCCAAAGCAAGGTAATAATAATAATAAAGCAGTGCTGTTCCAACCCGCGAGTCAATTCCTGCCAATGATCGATGAGGTGTACAAGATCTTGTTAGAAAAAACGAAGACTGTCCCAGGGGCTAAGGTTGAGAACAATAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTAGACGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTAGATTGGTGCTCATTGAGTATCCACAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATCCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCATTAGGGTACGAGAATTCGAATGATGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAGGGTAACAAATGCTGCCACGCCTAGCTTGCTAGTTTTGCGCAGTAGGGGTCAAGGAATTGGGATTCTCGTTTCTAGAGTTGCAAAAGAAACAGATGCTTCCTATTCCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGCGTTTGGTGGAGTGGAAAAGATCGAGTACTGTGACTCCCGCAAGTGTATAG 1143 0.4322 MMTNQNVVTHEVINTLIAMAASISNSTVLPSATVPESMAVLGGFWGLPHNKNLVKRLEGAKVSAWIDSMRASSPTRAKSESQEKRSWILYHPSALNTFEQIVYSAKGKQIVVFLDYDGTLSPIVADPNKAFMTRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDITGPTKSPKQGNNNNKAVLFQPASQFLPMIDEVYKILLEKTKTVPGAKVENNKFCLSVHFRCVDEKSWAALAEKVRLVLIEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFRVTNAATPSLLVLRSRGQGIGILVSRVAKETDASYSLQDPSEVEQFLRRLVEWKRSSTVTPASV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0883 380 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 112 321 IPR006379 -
Gso6g0883 380 Gene3D - 110 199 IPR023214 -
Gso6g0883 380 Gene3D - 201 377 IPR023214 -
Gso6g0883 380 SUPERFAMILY HAD-like 111 369 IPR036412 -
Gso6g0883 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 374 - -
Gso6g0883 380 TIGRFAM T6PP: trehalose-phosphatase 108 367 IPR003337 GO:0003824|GO:0005992
Gso6g0883 380 Pfam Trehalose-phosphatase 113 357 IPR003337 GO:0003824|GO:0005992
Gso6g0883 380 CDD HAD_TPP 111 359 - -
Gso6g0883 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 374 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0883 Gso-Chr6 8426108 8429126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0883 106 366 Trehalose Biosynthesis Gene Families AT1G70290 27.007 1.79e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0883 K01087 - gmx:100815979 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0894 4 9695606 9698451 Gso6g0883 6 8426108 8429126 GST
Gso14g1440 14 44820389 44823476 Gso6g0883 6 8426108 8429126 PCT
Gso13g0619 13 20141192 20144181 Gso6g0883 6 8426108 8429126 PCT
Gso6g0883 6 8426108 8429126 Gso14g1440 14 44820389 44823476 PCT
Gso6g0883 6 8426108 8429126 Gso13g0619 13 20141192 20144181 PCT