Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0858 ATGAATGAGACAGCGAGTCTTCATGCACCAACTAGGACACCCATTTCTTCTTTGGATGCAATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACAACGTTCACTAAGTTGTTCGTTGGAGGACTAGCCTGGGAGACTCCTACCGAAGAAATGCGCAAATATTTCGAGCAGTTCGGAGACATTCTTGAAGCTGTCATCATCACTGACAAGAACACCGGAAAATCCAAAGGCTATGGATTCGTAACATTCTGTGGACAAGAATCAGCTAGAAGGGCATGTGCTGATCCAAATCCAATAATAGATGGAAGAAGAGCTAATTGTAATATTGCTTCTCTTGGAAGGACTAGACCATCACCACCTAGTGGGAGGAATACAGTTCAAGGTGGAGTAGGAACAGCACAGGGTGTTCCAGGAGCGGGACCGGCGCCGTCACTACCGCCGCCACCACCTGTTCTGTATCCACCATATGGCTATACAACCTACACTCCTGATTATGGGTACCACCAAGCCACGATGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTTTATGAAGCATCATCTTCTACCATGGGCACCCCATATTACTATGGTTATTCTGTGCAAGCACCAAGAAACACATTTTCTTCTCCCCAAGCAAATCGTCTATCACCTGGACCGTCCTATCTATACTACCCTATACCAATAGAAGTCTCATTCTCTGGATATCGTCCTCCCCAACAATCACCAATGAGGCAAACCTTTCCTTCCCCTAAAGATTCACAGAGTCAGCCGCGTACCTCCTCTGAAACAACAGCCAGGGTAGCTATAACTTCAGAAAGATCAAATAGCCAAGGGAAGAACTAA 864 0.4641 MNETASLHAPTRTPISSLDAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFCGQESARRACADPNPIIDGRRANCNIASLGRTRPSPPSGRNTVQGGVGTAQGVPGAGPAPSLPPPPPVLYPPYGYTTYTPDYGYHQATMYNPQIQQPQYYQQLYEASSSTMGTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPIPIEVSFSGYRPPQQSPMRQTFPSPKDSQSQPRTSSETTARVAITSERSNSQGKN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0858 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Gso6g0858 287 SUPERFAMILY RNA-binding domain, RBD 22 139 IPR035979 GO:0003676
Gso6g0858 287 PANTHER - 24 278 - -
Gso6g0858 287 Gene3D - 16 133 IPR012677 -
Gso6g0858 287 SMART rrm1_1 39 111 IPR000504 GO:0003723
Gso6g0858 287 MobiDBLite consensus disorder prediction 114 151 - -
Gso6g0858 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Gso6g0858 287 CDD RRM_RBM24_RBM38_like 38 113 - -
Gso6g0858 287 MobiDBLite consensus disorder prediction 114 134 - -
Gso6g0858 287 PANTHER GEO13361P1-RELATED 24 278 - -
Gso6g0858 287 MobiDBLite consensus disorder prediction 241 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0858 Gso-Chr6 8155639 8160418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0858 34 114 C2H2 Transcription Factor Family AT2G19380 39.506 3.15e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0858 K25006 - gmx:100794651 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0863 4 9245681 9250480 Gso6g0858 6 8155639 8160418 GST
Gso14g1470 14 45598110 45603807 Gso6g0858 6 8155639 8160418 PCT
Gso13g0634 13 20398299 20403791 Gso6g0858 6 8155639 8160418 PCT
Gso6g0858 6 8155639 8160418 Gso14g1470 14 45598110 45603807 PCT
Gso6g0858 6 8155639 8160418 Gso13g0634 13 20398299 20403791 PCT