Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0851 ATGGAGTCTCAGAGTCAGAGAGATCGCAGGGCAGATGCTCTTGGAGACCTTCGAGTCCTTCCCGACGAAATCCTCTGCTCTATTTTGGAACGTCTCACTCCCCGAGATGCTGCTCGCGTCTCTTGCGTTAGCAGTGTGATGTACATACTGTGCAATGAAGATCCACTGTGGATGAGTCTATGCCTAAAAGGAGCATCTGGTTTCCTTCAATACAAAGGCTCTTGGAAGAAAACTGCCCTGCATAATGAGAATCTGCTAGACAAATACAAAGAGTACAGTCAAGGACCTTTACATTTTGACGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGCCATACCACATTGGATGCATTTTATGCAGATACTGGAAATGTGAAAAGAATAAAAGACATCCCGCTGAAGGACTTTTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGTTCCCGGAAGATCTCCATGAAGTTAAAGGATTATGTCTCTTATATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGTACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATACAGAAAAACGACCATCCTATAGGTGGCTCATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGCCGTAAAAGATGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTGCATGTCAATGAAGAAGATGGTGATGTCAATGTTGAGACTCCATCATCACTTCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAACTTTGAATATGTATGTTTGGATATGGCACCTGGTTATTGTCATAAAGGAGTTTGCCGTGTTGGGTTACTTGCTCTTGATGAAGTTAGTTATGAAAATGTCAGACAGAATGTGTCATGTAATGAAACAGACTCAAGTTACTCTGCTTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGTAGATGATCTATATTACAAAAGAGCCATGGATGGTGTATCTAGAAACTACAATTTATGGAAAGATGGATTTTCCTATGATATAAAGTTCTTATCCATGTTTTTGGATAGAGACAGAGACCATTACAGTTCCCTGTGGAGCTCAGGCAACAGCATGGGCCAGCGAGAACTAAGAGAATGGTTATCCAAGCTCTGGATTCAAAAACCAAAATTGAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCGACAAGTGGTTAGAATGCCTATCAAAAATTTGTGCCTTTCATAATTTGCCACTTCCCACTGACGATGAAAGGCTTCCAGTCGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTTGGGACAGAGCTAGAGTTTCATAGTCTGTTGCATGAAGCCAACTCCCCTCTCAGTAAACACATTCCTGAGGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTATACCAATTTAAGTTGGGATGGAAAAGGAGTCCCTGATGTCATTGTGAAAAATAATCTGATCAGGGAGAAATGCAGTGTTGATGGTTTCTCATTTGGGGTATGGGGAAAGAAACAGTTAGAGTACAGAAATGCTGGGATGCCGGTGGATGGATCAGTTAGCTTAGCTGGTAACTCAAGCATATGGCCATATATGATAATAAAACGATGTGAAGGGAATATGTTTGCAGACTTAAGAGACAGACTAACATGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGGGAGCAGCTACGCCACCTTCATCTTTTATCATATCCACGTCTAAATATTTCATCTTTCTCTGATATTGAACATGAATTAGGCTTGGGTGAGGCTAATGGTTGCATTGCAACTGTTCACTGTAAATCTAACGCTACAGCAGAATGGAGGCTCTTTACCAGAACCTTAACAAAGATGAGGAAGGATGTGTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATAGAGAAGATTGATGAATATATCCCACCTGATTTTGCTGAGCTGCTAAATATAACTGAGAATTTTGGAAATGGTGCTTGTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCACCAGTGGGAATACTGAAGATACCACCATGGTGGACAATGGTTTGTTGAGTAACGATGAAGTAAAATCATGGTGTCCTAGTAATATTCTTGATTTTAGTGATCTTTCGATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCTTATCTCCTTAAGAAGTTTTTAGAAAGCTACAAACTTCCTTTTGCTAGTAACATATCAAGATATGAGTCAACAGAGGGTGATCAAAAGTTCGGCCGACTTTCATATGTTGCCATGTGCTATTGTATCTTGCATGATGACAATGTCTTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGATCAGCAAAGTCATGGGAAGAAGTTGAACTAACAGTGTGGGGGGAATTGAACAATTACAAAGGCTTTCCGTGA 2913 0.4041 MESQSQRDRRADALGDLRVLPDEILCSILERLTPRDAARVSCVSSVMYILCNEDPLWMSLCLKGASGFLQYKGSWKKTALHNENLLDKYKEYSQGPLHFDGFNSLFLYRRLYRCHTTLDAFYADTGNVKRIKDIPLKDFYNEYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKLKDYVSYMKVQHDEDPLYIFDEKFGEAVPSLLKDYCVPHLFQEDFFDILDTEKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEYVCLDMAPGYCHKGVCRVGLLALDEVSYENVRQNVSCNETDSSYSALSRKEKRAKTQKDVDDLYYKRAMDGVSRNYNLWKDGFSYDIKFLSMFLDRDRDHYSSLWSSGNSMGQRELREWLSKLWIQKPKLRELIWKGACIALNADKWLECLSKICAFHNLPLPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGFGTELEFHSLLHEANSPLSKHIPEVLASGIIYLENGSYTNLSWDGKGVPDVIVKNNLIREKCSVDGFSFGVWGKKQLEYRNAGMPVDGSVSLAGNSSIWPYMIIKRCEGNMFADLRDRLTWEDTTNLASFLGEQLRHLHLLSYPRLNISSFSDIEHELGLGEANGCIATVHCKSNATAEWRLFTRTLTKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDFAELLNITENFGNGACKPCSWIHTDIMDDNIYMKPSLVCSTTSGNTEDTTMVDNGLLSNDEVKSWCPSNILDFSDLSIGDPLVDLIPIYLDVFRGDSYLLKKFLESYKLPFASNISRYESTEGDQKFGRLSYVAMCYCILHDDNVLGALFSIWEELRSAKSWEEVELTVWGELNNYKGFP* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0851 970 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 2 903 - -
Gso6g0851 970 Pfam Cupin-like domain 145 367 IPR041667 -
Gso6g0851 970 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 2 903 - -
Gso6g0851 970 SUPERFAMILY F-box domain 6 65 IPR036047 GO:0005515
Gso6g0851 970 Gene3D Cupin 112 365 - -
Gso6g0851 970 ProSiteProfiles F-box domain profile. 14 60 IPR001810 GO:0005515
Gso6g0851 970 ProSiteProfiles JmjC domain profile. 217 380 IPR003347 -
Gso6g0851 970 SUPERFAMILY Protein kinase-like (PK-like) 669 901 IPR011009 -
Gso6g0851 970 SMART cupin_9 208 375 IPR003347 -
Gso6g0851 970 Gene3D - 3 91 - -
Gso6g0851 970 SUPERFAMILY Clavaminate synthase-like 122 372 - -
Gso6g0851 970 SMART fbox_2 20 60 IPR001810 GO:0005515
Gso6g0851 970 Pfam F-box-like 19 63 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0851 Gso-Chr6 8094395 8104450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0851 1 966 Glycosyltransferase AT1G78280 60.410 0.0 1204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso6g0851 Cupin_8 1.5e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0851 - - gmx:100792541 2015.74