Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0840 ATGGCGCTACTACGTCTTGTTTGCTTACCTTCAACAAATCAATTATCCACTCAACCCCATTCCCAATCCACCTCTTTCTCTTTTCTTCGCAAAACGCCCCATTCTCAACCCATCAATTTCAGTCTCTCTTCCTTTCACTTTCCACGCCTATCCCTTATCACAACCAAACAAACCCTTAACCTCACTCCCACACATGCCTCCACTTCCGAACAACAAACCGAGGAGCCTCTTGTCTCTGAAGAAGAATTTTCTCGCACCAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCTGAAGACATTCGCACCCTCTTCGAAAAACATGGGAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAGGCACTGGAAGCTCTCAATAATCTCGAATCGTATGAGTTTGAGGGTCGTGTAATTAAAGTCAATTATGCTCGGCCAAAAAAGGAGAAAACAGCGCCGCCCCCTGTGAAACCAAAGGTGGTGACGTTTAACTTGTTTGTTGCTAACTTATCCTATGAAGCAAGCTCCAAAGATCTTAAGGAGTTTTTTGATTTGGGAACTGGTAGAGTTGTCTCTGCTGAGGTTGTGTATCGTGATAATCCTAGAAGGCCGTCTGGATATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGTTTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGTTTTGTTCAACAACCAGGGGACGGGAGTGCAAAGTCTGAAGATACTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAGCTCCACAACCAGCAGAGGGGAGTGCAAAGTCTGAAGATACTCCTTCTGAGTTGAGTGTGAATGGGGAAGAAGCTGACAAAGCTGATTGA 942 0.4671 MALLRLVCLPSTNQLSTQPHSQSTSFSFLRKTPHSQPINFSLSSFHFPRLSLITTKQTLNLTPTHASTSEQQTEEPLVSEEEFSRTRLLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKTAPPPVKPKVVTFNLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKSKKEAEAALAEFQGKVFMGRPIRVDRGRRFVQQPGDGSAKSEDTPSELSVNGAEAPQPAEGSAKSEDTPSELSVNGEEADKAD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0840 313 SUPERFAMILY RNA-binding domain, RBD 67 170 IPR035979 GO:0003676
Gso6g0840 313 Gene3D - 56 169 IPR012677 -
Gso6g0840 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Gso6g0840 313 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 285 - -
Gso6g0840 313 CDD RRM_SF 182 255 - -
Gso6g0840 313 MobiDBLite consensus disorder prediction 267 281 - -
Gso6g0840 313 PANTHER OS08G0483200 PROTEIN 1 285 - -
Gso6g0840 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Gso6g0840 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 253 IPR000504 GO:0003723
Gso6g0840 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 259 IPR000504 GO:0003723
Gso6g0840 313 Gene3D - 170 291 IPR012677 -
Gso6g0840 313 SMART rrm1_1 181 255 IPR000504 GO:0003723
Gso6g0840 313 SMART rrm1_1 87 159 IPR000504 GO:0003723
Gso6g0840 313 MobiDBLite consensus disorder prediction 257 313 - -
Gso6g0840 313 SUPERFAMILY RNA-binding domain, RBD 179 263 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0840 Gso-Chr6 7998662 8000919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0840 86 262 Eukaryotic Initiation Factors Gene Family AT3G16380 30.208 8.75e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0840 - - gmx:100790439 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0839 4 8905458 8907788 Gso6g0840 6 7998662 8000919 GST