Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0838 ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTTGCGTATGGTTGCAACAAGGATTATTTGTACTCCTTAGTTGGAGCAACACCCACCTACGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACCTTTATGCAAATTGGGATTCATCTTCTACCTCAATGTTGCAAAATGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGAACAATCCGTGACAACCCCTTCTTTTCCTCCTTCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACCACCACGAGCCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACGCACATTGCTGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCCTCTTATGTTCAAAGGGGTGACCAAGCCTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGCCAAAAGAGAACGAACCAAGGGAAAGAGAATGTTGTTGGGTTAAATGGGACGTCGACAACAACAACAACAACACCCTTTGCTGAGTTCTTCGCGTTTCCTCAATACACGACACGTGGTACGACGATGGCACAGAACAACCAGGAGCAGAAACAGTGGGCCGTAGCAGACATTGAAGTGACCATGGTGGATAACCATGCCAATCTAAAGGTACTATCAAAGAAACAACCTGGGCAGATTATGAAGATCGTTGTTGGGCTTCAAAGTCTCAAGCTCAGCATTCTCCACCTTAATGTTTCCACTCTTGATGATATGGTCCTTTACTCAGTTAGCGTCAAGGTAGAGGACGGGTGTCTGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA 1005 0.4756 MALEAVVFPQDPFAYGCNKDYLYSLVGATPTYGNFQAAEEEKVLLGIINNNIEHNLYANWDSSSTSMLQNVKEQQWDSHSSPEACTVEQSVTTPSFPPSPPPSSSVEATVTTTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQGKENVVGLNGTSTTTTTTPFAEFFAFPQYTTRGTTMAQNNQEQKQWAVADIEVTMVDNHANLKVLSKKQPGQIMKIVVGLQSLKLSILHLNVSTLDDMVLYSVSVKVEDGCLLNTVDEIAAAVNQLLRTIQEVTFS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0838 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Gso6g0838 334 PANTHER MAX DIMERIZATION, MAD 1 330 - -
Gso6g0838 334 Gene3D - 122 199 IPR036638 GO:0046983
Gso6g0838 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 197 IPR036638 GO:0046983
Gso6g0838 334 Coils Coil 180 200 - -
Gso6g0838 334 CDD bHLH_AtFAMA_like 135 198 - -
Gso6g0838 334 ProSiteProfiles ACT domain profile. 259 334 IPR002912 -
Gso6g0838 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 330 - -
Gso6g0838 334 SMART finulus 138 189 IPR011598 GO:0046983
Gso6g0838 334 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Gso6g0838 334 MobiDBLite consensus disorder prediction 71 129 - -
Gso6g0838 334 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0838 Gso-Chr6 7986526 7988498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0838 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.470 5.85e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g0838 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0838 - - gmx:100789380 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0837 4 8878624 8880597 Gso6g0838 6 7986526 7988498 GST
Gso14g1497 14 46203850 46207543 Gso6g0838 6 7986526 7988498 PCT
Gso2g1793 2 41678557 41682083 Gso6g0838 6 7986526 7988498 PCT
Gso6g0838 6 7986526 7988498 Gso14g1497 14 46203850 46207543 PCT
Gso6g0838 6 7986526 7988498 Gso2g1793 2 41678557 41682083 PCT