Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0837 ATGACCACTCTCACACACTCCAATTTCCACCATGACCTTCTTCTTCTTTTCTATTTTTTTCTCCTCACAGAATTTCCGTCGCCGCTCACCGCGCAGCTTCCGGACACGCTAACTCCGCCGTCTCCGCAGCAGCAGGAGGACCGTTTTGCGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGGTGATCCTCGTGGCGGTGTTCTTCGTCCTAGGGTTCCTCTCCGTGTACACTCGCCAGTGCGCGGAGCGCAGGATGCGAGGGAGGTTCGACATCTCCATCTCCATCTCGCGCCGGCAACGCGGCCTGGACCGCGAAATCATCGAAACGTTCCCAACGTTCGTGTACTCCACCGTAAAGAGCCTCAAGTTAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCGAGGAGGTCGAAACGCTGCGTTTCATCCCAAATTGCAGCCACGTGTTCCACTCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTGTGTCGCGCCAATCTTTTTCCCAAACCTGATGACCCGTCTTTTGATCCTATCCAAATTCCGGATCCGGAACAACCCGTTATATCATCACCGACCCGAGCCGAAACTGGGGGCTCTAATCCTCGTTCTCCGAATTTGATTGATCAGAACCCTACGTCGCGGTCAAGGTCAACGGGTTTTCGTATCGCGGGGTGGTTTCCGCGGTCTCACTCGACGGGTCACTCGCTGGTTCAACCCGGGGAGAATTGTGAACGGTTTACGCTGCATTTGCCTGAGGAAGTGCGGAACCAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGGGCGTGACGTTCACGCGCGAGAACAGTGAAAGGAGGGGTTATAGGGCGAGGAGCGTTGGTAGTAGCCTCAGCCCTCACGTGAGGGGGTGGTTTTCTGTGAAGGATGATGTCGGGGAAAGGTCTTCGGATCGGTTATTCTCCACGTCGACAAGGGATAGTGAGGTTTAG 1005 0.5602 MTTLTHSNFHHDLLLLFYFFLLTEFPSPLTAQLPDTLTPPSPQQQEDRFARLKFDKSMAIVLVILVAVFFVLGFLSVYTRQCAERRMRGRFDISISISRRQRGLDREIIETFPTFVYSTVKSLKLGRATLECAVCLNEFEEVETLRFIPNCSHVFHSECIDAWLANHSTCPVCRANLFPKPDDPSFDPIQIPDPEQPVISSPTRAETGGSNPRSPNLIDQNPTSRSRSTGFRIAGWFPRSHSTGHSLVQPGENCERFTLHLPEEVRNQLMLSRTKSCGVGVTFTRENSERRGYRARSVGSSLSPHVRGWFSVKDDVGERSSDRLFSTSTRDSEV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0837 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 179 IPR013083 -
Gso6g0837 334 MobiDBLite consensus disorder prediction 184 229 - -
Gso6g0837 334 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gso6g0837 334 PANTHER RING FINGER DOMAIN-CONTAINING 13 280 - -
Gso6g0837 334 Pfam Ring finger domain 131 174 IPR001841 -
Gso6g0837 334 SUPERFAMILY RING/U-box 131 183 - -
Gso6g0837 334 SMART ring_2 132 173 IPR001841 -
Gso6g0837 334 CDD RING-H2_PA-TM-RING 131 174 - -
Gso6g0837 334 MobiDBLite consensus disorder prediction 196 229 - -
Gso6g0837 334 PANTHER RING-H2 FINGER PROTEIN ATL11 13 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0837 Gso-Chr6 7968626 7970400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0837 1 297 Rapid Response to Elicitors AT3G05200 39.877 4.47e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0837 K10664 - gmx:100805815 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1907 4 49282378 49284858 Gso6g0837 6 7968626 7970400 GST
Gso14g1501 14 46296833 46298570 Gso6g0837 6 7968626 7970400 PCT
Gso2g1795 2 41717415 41719315 Gso6g0837 6 7968626 7970400 PCT
Gso6g0837 6 7968626 7970400 Gso14g1501 14 46296833 46298570 PCT
Gso6g0837 6 7968626 7970400 Gso2g1795 2 41717415 41719315 PCT