Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0825 ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCTGCTATACCCGTCGACGACGATGACGACGACGACGACGGCGGTGATGATGACGCTATGGATGACTTGGAGGATGCGAATGTTAATTCAGTGAACGTTGCTGCTAATGCCGCGGCGAGTGTAAATCATGAAGCGGTAGTGGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGCGAGGTTTATGTCTTTCCCGCTATCACTCCTCAGAAGGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAAGTGTGCCTGCTGTTGAACAACCATTTGACCAAAGTAACAGGGGCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTAGTCAGGTTCCGTGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTCAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGATGGCACTTCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTTAGAGATCTCAGTAAGGGCGGAAGGAGTCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTGCTTGAAGGGGAATTGCCAGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCGGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACGTTCTGCCACTGGGAATTGGGCATTCTTCAACAAATGAGAATGAACAGGAACCTCTGGTCGAGCTTTCTAATCCTTCAGATACAGATATTGATATTCCAGGAAACTTTGATTAG 1056 0.4792 MATVNPQPLQFEDPAIPVDDDDDDDDGGDDDAMDDLEDANVNSVNVAANAAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAITPQKVQAVLLLLGGRDVQASVPAVEQPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQDGTSHSESVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNENEQEPLVELSNPSDTDIDIPGNFD* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0825 351 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 351 - -
Gso6g0825 351 MobiDBLite consensus disorder prediction 318 337 - -
Gso6g0825 351 MobiDBLite consensus disorder prediction 163 198 - -
Gso6g0825 351 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Gso6g0825 351 MobiDBLite consensus disorder prediction 171 194 - -
Gso6g0825 351 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Gso6g0825 351 MobiDBLite consensus disorder prediction 15 36 - -
Gso6g0825 351 Pfam CCT motif 130 171 IPR010402 GO:0005515
Gso6g0825 351 ProSiteProfiles GATA-type zinc finger domain profile. 195 251 IPR000679 GO:0006355|GO:0043565
Gso6g0825 351 Pfam tify domain 64 96 IPR010399 -
Gso6g0825 351 MobiDBLite consensus disorder prediction 239 351 - -
Gso6g0825 351 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Gso6g0825 351 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Gso6g0825 351 SMART tify_2 62 97 IPR010399 -
Gso6g0825 351 MobiDBLite consensus disorder prediction 1 36 - -
Gso6g0825 351 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Gso6g0825 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 246 - -
Gso6g0825 351 Gene3D - 192 252 IPR013088 GO:0006355|GO:0008270
Gso6g0825 351 PANTHER GATA TRANSCRIPTION FACTOR 28 1 351 IPR045280 GO:0006355
Gso6g0825 351 MobiDBLite consensus disorder prediction 283 301 - -
Gso6g0825 351 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0825 Gso-Chr6 7825597 7832558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0825 5 243 Tify Gene Family AT1G51600 49.225 3.14e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso6g0825 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0825 - - gmx:100784257 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0819 4 8567481 8581147 Gso6g0825 6 7825597 7832558 GST