Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0824 ATGTTCGGCTCCATGAACAAGATCGTCTCCGCTGAAGACACCGACGGCTCCGTCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGACGGCGCCGCCTCCGATCACCACATCCATTACAGTTCCCACACCATCGAAGAGGACGGCGCCGTCTCCAACCACCACATCCATTACAGTTCCCACACCATCGAAGAAGACGGCGGCGCCACTGTCGAAGAGGTTTCCGCCGTTCCGCCCCTTGAAATCTCTATCAACGATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGACGCTGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGTTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCAAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACAGCGAGCAGCGTCATTGAATAGGTTTCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCTGAAACCTTGTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAGGAACACTCTCTTGCACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGACTTTGACTGTCGGAGTGGCATCCCTGCACAACATAACAATCTTGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 930 0.4828 MFGSMNKIVSAEDTDGSVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGAVSNHHIHYSSHTIEEDGGATVEEVSAVPPLEISINDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNNDFDCRSGIPAQHNNLVNDNKALVSDR* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0824 309 PANTHER GATA TRANSCRIPTION FACTOR 25 21 291 - -
Gso6g0824 309 PANTHER GATA TRANSCRIPTION FACTOR 28 21 291 IPR045280 GO:0006355
Gso6g0824 309 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Gso6g0824 309 MobiDBLite consensus disorder prediction 275 294 - -
Gso6g0824 309 MobiDBLite consensus disorder prediction 186 212 - -
Gso6g0824 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 267 - -
Gso6g0824 309 Gene3D - 212 270 IPR013088 GO:0006355|GO:0008270
Gso6g0824 309 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Gso6g0824 309 ProSiteProfiles GATA-type zinc finger domain profile. 215 273 IPR000679 GO:0006355|GO:0043565
Gso6g0824 309 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Gso6g0824 309 CDD ZnF_GATA 221 266 IPR000679 GO:0006355|GO:0043565
Gso6g0824 309 MobiDBLite consensus disorder prediction 188 212 - -
Gso6g0824 309 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Gso6g0824 309 Pfam CCT motif 153 195 IPR010402 GO:0005515
Gso6g0824 309 MobiDBLite consensus disorder prediction 265 294 - -
Gso6g0824 309 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Gso6g0824 309 SMART tify_2 86 121 IPR010399 -
Gso6g0824 309 Pfam tify domain 90 120 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0824 Gso-Chr6 7817483 7823310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0824 90 271 Tify Gene Family AT4G24470 70.109 7.24e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso6g0824 CCT 2.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0824 - - gmx:100809517 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0818 4 8559739 8564680 Gso6g0824 6 7817483 7823310 GST
Gso14g1545 14 47036105 47041048 Gso6g0824 6 7817483 7823310 PCT
Gso2g1836 2 42341202 42345705 Gso6g0824 6 7817483 7823310 PCT