LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0811	ATGTCTACACTGACCCGTCTTTTTGATCTTCCGGAACAGATATGTTACATACAATGTGGATTCTGTAACACTATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCAATGGTGGTGACTGTAAGATGCGGGCACTGCACAAACCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGTCACAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATATAATTCCAATGAGTCATCATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAGGAGGAGATTAAAAGGCTAAAGGCTGAAAATCCTGAAATGAGCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCAAACTCAGTGGTGCAAAGGAGATGAAGAGAGGTGTAGCCAGACAGAACAACTTGTTGATCTTGACTCACTAGTGGACCCTGCTGATGCTGAGGTCAATGAAGAAGTTCAAGGTTTCCGTGGAAGAAAGGTGCCAAGAAATTCCATCTTGGAAACGACACAGTTTGAATGA	654	0.419	MSTLTRLFDLPEQICYIQCGFCNTILMVSVPCSSLSMVVTVRCGHCTNLLSVNMLKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDIIPMSHHVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPEMSHKEAFSTAAKNWANFPQTQWCKGDEERCSQTEQLVDLDSLVDPADAEVNEEVQGFRGRKVPRNSILETTQFE*	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g0811	217	Pfam	YABBY protein	11	164	IPR006780	GO:0007275
	Gso6g0811	217	Gene3D	High mobility group box domain	108	177	IPR036910	-
	Gso6g0811	217	SUPERFAMILY	HMG-box	109	163	IPR036910	-
	Gso6g0811	217	PANTHER	AXIAL REGULATOR YABBY 4	1	178	-	-
	Gso6g0811	217	PANTHER	PROTEIN YABBY 6-RELATED	1	178	IPR006780	GO:0007275
	Gso6g0811	217	CDD	HMGB-UBF_HMG-box	121	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0811	Gso-Chr6	7675719	7678772	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g0811	2	217	C2C2-YABBY Transcription Factor Family	AT1G23420	55.022	1.14e-67	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-YABBY	Gso6g0811		YABBY	1.3e-63	CL0114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g0811	K25796		-	gmx:100779415	445.277