Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0803 ATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGCAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA 663 0.4268 MTRTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKYSTHSHGINKLDKPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKENQIMSQISELQKKLAEKEKEAMLCKAKIPFMVDSDKGIMQEEGVSLDSTNNISSCISDPPLEDGSSDISLTLGLPFSN* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0803 220 Pfam K-box region 91 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso6g0803 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Gso6g0803 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 214 - -
Gso6g0803 220 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso6g0803 220 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso6g0803 220 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 214 - -
Gso6g0803 220 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gso6g0803 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso6g0803 220 Coils Coil 123 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0803 Gso-Chr6 7606892 7612826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0803 1 218 MADS-box Gene Family AT2G22540 50.628 1.55e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso6g0803 K-box 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0803 - - gmx:100776749 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0800 4 8271618 8279397 Gso6g0803 6 7606892 7612826 GST