Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0799 ATGGAATTTGACGAGCACGAGGACCAAGAGCAAGAAGAGGAGGAGGAGGAGGAGGAAATGGGATTCTCAGTGGCGGCGGCGGCGAGTTACGACTCGCTGGGAAACGCCGCGGTGAGGTCTAAAATTAGCGGCGGCGATGGTGTTGCGGCCACCGTGAATTCCGGTCGCAAAGGGACGGTGAGATACAGAGAATGTCAGAAGAACCATGCCGTCAGCATCGGCGGCCACGCCGTCGACGGATGCTGCGAGTTCTTGGCTGCCGGAGAGGAAGGCACGCTGGAAGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAACTTCCACCGCAAGGAGATCGACGGCGAAACCAGCCCTTACCAGCACCGTTCGCAGCCACAGCCTCAGCCTCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCGCCCCCACCTTCCGCCGCCGGATATCTCCACCACCACCTTGTAACACCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCACCGTTAGCTTCTGGAGGAGTGTTCAGTAGGGAGGAAGAGGACATGTCAAACCCCAGCTCCAGCGGCGGCGGCGGTGGTGGCGGTTTTAGTGGCGGTGGTGGTAGCGGGAGTGGAACGAAGAAGAGGTTTAGAACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTTGAACAATTCTGCGCTGAAACTTGCATCAAGAGACATGTACTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACATTCGGCTGGGAATGGATCGAATCACTTGAACAGCACCACAATAATTGAGAATTCTCAATTCTCCTGA 897 0.5596 MEFDEHEDQEQEEEEEEEEMGFSVAAAASYDSLGNAAVRSKISGGDGVAATVNSGRKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGETSPYQHRSQPQPQPLHPQYHHQFSPYYHRAPPPSAAGYLHHHLVTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGGFSGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCIKRHVLKVWMHNNKHTLANSEQHSAGNGSNHLNSTTIIENSQFS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0799 298 MobiDBLite consensus disorder prediction 118 133 - -
Gso6g0799 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 268 IPR006455 -
Gso6g0799 298 MobiDBLite consensus disorder prediction 274 298 - -
Gso6g0799 298 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
Gso6g0799 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Gso6g0799 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 272 - -
Gso6g0799 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 272 - -
Gso6g0799 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Gso6g0799 298 MobiDBLite consensus disorder prediction 164 213 - -
Gso6g0799 298 MobiDBLite consensus disorder prediction 115 134 - -
Gso6g0799 298 SUPERFAMILY Homeodomain-like 199 270 IPR009057 -
Gso6g0799 298 MobiDBLite consensus disorder prediction 1 26 - -
Gso6g0799 298 MobiDBLite consensus disorder prediction 1 21 - -
Gso6g0799 298 Gene3D - 201 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0799 Gso-Chr6 7560235 7561439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0799 14 271 ZF-HD Transcription Factor Family AT4G24660 49.615 2.99e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso6g0799 ZF-HD_dimer 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0799 - - gmx:100820567 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0794 4 8193056 8194871 Gso6g0799 6 7560235 7561439 GST
Gso14g1515 14 46556961 46558272 Gso6g0799 6 7560235 7561439 PCT
Gso2g1805 2 41848502 41850651 Gso6g0799 6 7560235 7561439 PCT
Gso6g0799 6 7560235 7561439 Gso14g1515 14 46556961 46558272 PCT
Gso6g0799 6 7560235 7561439 Gso2g1805 2 41848502 41850651 PCT