Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0782 ATGTCGTCGCCGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTGTGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTCTCTCGCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCATATGCAATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAACTTAGAAAGGACAAATTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGAAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTTGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAACTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTCGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAGAGCGGACGATGATGGCTACTTCTCCGTCAGCAATATACGTGCTGGAGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATCAACATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGCGTGAACAAAAGCAGTAGCTATAAACTGAGAGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGGCATACCTGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGAAATGGTCCATTTCAGGCCATCATGTATGATTATATTCGTTTGGAAGCTCCACCGTCGTCTAGCTTCAACAAGAAAAATTGA 1932 0.4291 MSSPGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTDPLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFIGDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVGIPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEAPPSSSFNKKN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0782 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Gso6g0782 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Gso6g0782 643 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso6g0782 643 CDD RGL4_C 445 632 - -
Gso6g0782 643 SUPERFAMILY Starch-binding domain-like 377 427 IPR013784 GO:0030246
Gso6g0782 643 Gene3D - 6 299 IPR014718 GO:0030246
Gso6g0782 643 CDD RGL4_N 8 294 - -
Gso6g0782 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Gso6g0782 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Gso6g0782 643 Gene3D - 441 632 - -
Gso6g0782 643 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Gso6g0782 643 Gene3D - 333 426 - -
Gso6g0782 643 CDD RGL4_M 334 433 IPR029413 -
Gso6g0782 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0782 Gso-Chr6 7367736 7372651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0782 1 634 Polysaccharide Lyase AT1G09890 72.484 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0782 K18195 - gmx:100814721 1341.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0776 4 7951469 7956816 Gso6g0782 6 7367736 7372651 GST