Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0781 ATGTCCGGCCCAGGGGTACAGTTGCACATCCAAGATCACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATGTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTTGCAAGAATGTGGGATCATTCACTAGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACCTAAATGGATGGCCAGATTTTGATATTAGTGAAACAAGGATCACTTTCAAGCTTAGGAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGGTTATGCCTTTTCCTGAAGATCGGTTAGCAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGTAAACATGAATAATCGAGTCCATGGGTGGATATCTTTCAGTCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCGCATGTAGGCCCTACCACGCTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCCGGAGCAGTTGGTGATAACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAACGGGGCAATGTCAGTGGCAGATTACTTGTCTTAGACAGGTATGTCTGCACAGACTTAATACCAGCAAATAGTGCTTATGTTGGCTTAGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAAAATGGATTTTTTACTATTAAAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTATGAAGATAACATCAGGTTCTTACATTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTTATGCTCCTGATCCCAGTCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGATAGGTATTCAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATACGAAGGATTGGTTTTATGCACAGGCTCCGAGGAAAAAAGTGGATAACACTCTTCAAGGAACAACTTGGCAAATCAAGTTCGAAATCTGTAGTGTTGTTAAAGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCCAATGCAAGGCGACCCGTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCAAGGGATCTATTGGCTGTACCATGTGAATATACCAGGTTCTCTTCTTGTTGATGGCACAAATACCATATATTTTTCGCAACCAAGATGCACCAGTCCCTTCCAAGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCTTGTGAAGAAATTTAA 1911 0.415 MSGPGVQLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGMFDVIKGTCFKVIVQNEEQVELSFARMWDHSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDISETRITFKLRKDKFQYMAMADNRQRVMPFPEDRLAGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCVNMNNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKFRGGESWKKVFGPVYIYLNSGAVGDNPLWLWEDAKIQMMNEVQSWPYSFPASEDFLKSDQRGNVSGRLLVLDRYVCTDLIPANSAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIKNVRPGDYNLFAWVPGFVGDYKFGDFMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPSPQHINKLFINHPDRFRQYGLWDRYSELYPDADLVYTIGVSDYTKDWFYAQAPRKKVDNTLQGTTWQIKFEICSVVKGSTYKLRVAIASATLAELQIRVNDPNARRPVFTSGLIGRDNSIARHGIQGIYWLYHVNIPGSLLVDGTNTIYFSQPRCTSPFQGIMYDYIRLEGPPCEEI* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0781 636 CDD RGL4_M 331 430 IPR029413 -
Gso6g0781 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 634 - -
Gso6g0781 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Gso6g0781 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 634 - -
Gso6g0781 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Gso6g0781 636 Gene3D - 438 629 - -
Gso6g0781 636 CDD RGL4_C 442 629 - -
Gso6g0781 636 Gene3D - 328 421 - -
Gso6g0781 636 SUPERFAMILY Starch-binding domain-like 331 411 IPR013784 GO:0030246
Gso6g0781 636 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso6g0781 636 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Gso6g0781 636 Gene3D - 6 307 IPR014718 GO:0030246
Gso6g0781 636 CDD RGL4_N 14 292 - -
Gso6g0781 636 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0781 Gso-Chr6 7359348 7366421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0781 1 632 Polysaccharide Lyase AT1G09910 70.095 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0781 K18195 - gmx:100814185 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0775 4 7943905 7949029 Gso6g0781 6 7359348 7366421 GST